[Home] | [Total List]

[183836_at]

Description T25E12.6 /REP_DB=WormBase Gene ID /WP=CE16467 /TR=O45820 /GB=CAB04824.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 68      4grp_total > 34      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 17
(-3)
A 		67.1
(3)
A 		17.4
(-3)
A 		46.5
(0.5)
A 		50
B 28.3
(-3)
A 		33.3
(-2.2)
A 		43.8
(-0.4)
A 		63.7
(3)
P 		35
C 35.1
(-3)
A 		67.7
(3)
P 		43.4
(-1.5)
A 		53
(0.3)
P 		33
avr 26.8
(-3) 		56
(3) 		34.9
(-1.3) 		54.4
(2.7) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 187
1 2 3 4 5 6 range
A 73.9
(-1.8)
P 		61.3
(-2.3)
A 		51.1
(-2.7)
P 		43.4
(-3)
A 		73.7
(-1.8)
P 		193.4
(3)
P 		150
B 84.3
(-0.3)
P 		35.6
(-2.6)
A 		26.2
(-3)
A 		71.4
(-0.9)
A 		64.9
(-1.2)
P 		156.3
(3)
P 		130
C 75.5
(-2.3)
P 		77.9
(-2.2)
P 		68.7
(-2.5)
P 		71.5
(-2.4)
A 		56
(-3)
P 		213.3
(3)
P 		157
avr 77.9
(-1.7) 		58.3
(-2.6) 		48.7
(-3) 		62.1
(-2.4) 		64.9
(-2.3) 		187.7
(3) 		139
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 6.2
(-2)
A 		14.6
(3)
A 		4.5
(-3)
A 		6.8
(-1.6)
A 		10
B 9
(-2.1)
A 		8.2
(-3)
A 		10.1
(-0.9)
A 		13.6
(3)
P 		5
C 11.6
(-1.5)
A 		19.5
(3)
P 		15.1
(0.5)
A 		8.9
(-3)
P 		11
avr 8.9
(-3) 		14.1
(3) 		9.9
(-1.8) 		9.8
(-2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 13.6
(-2.6)
P 		21.8
(-1.2)
A 		11.1
(-3)
P 		11
(-3)
A 		22.2
(-1.1)
P 		47.1
(3)
P 		36
B 29.3
(-0.4)
P 		11.9
(-2.4)
A 		6.4
(-3)
A 		18.9
(-1.6)
A 		26.4
(-0.7)
P 		58.3
(3)
P 		52
C 28
(-1.6)
P 		23.8
(-2)
P 		17.5
(-2.7)
P 		14.4
(-3)
A 		18.1
(-2.6)
P 		71.4
(3)
P 		57
avr 23.6
(-1.5) 		19.2
(-2) 		11.7
(-3) 		14.8
(-2.6) 		22.2
(-1.7) 		58.9
(3) 		47
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183836_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14178
Sequence Type Exemplar sequence
Representative Public ID T25E12.6 NCBI
Target Description T25E12.6 /REP_DB=WormBase Gene ID /WP=CE16467 /TR=O45820 /GB=CAB04824.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074836(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074836 NCBI Caenorhabditis elegans T25E12.6 (T25E12.6) mRNA, complete cds. 11/11 None
SNAP00000017070 ENSEMBL cdna:SNAP chromosome:CEL140:V:16745138:16751143:1 11/11 None
GENEFINDER00000017076 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16745138:16747389:1 11/11 None
T25E12.6 ENSEMBL cdna:known chromosome:CEL140:V:16745072:16747393:1 gene:T25E12.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16745137-16747389(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T25E12.6
Entrez Gene 180118 Entrez gene
SwissProt O45820 EMBL-EBI
WormBase CE16467 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB04824 Hypothetical protein T25E12.6 [Caenorhabditis elegans] ref|NP_507237.1| T25E12.6 [Caenorhabditis elegans] 1.0E-163
blast CAB04824 Hypothetical protein T25E12.6 [Caenorhabditis elegans] ref|NP_507237.1| T25E12.6 [Caenorhabditis elegans] 1.0E-162
Protein Domains
Database ID Description E-Value
Pfam IPR002900 EMBL-EBI Protein of unknown function DUF38 6.4E-12
Sequence
Target Sequence 
>C. ELEGANS:183836_AT
tgtgccttttgccgtattttgaaccaggatatctccgaagaatttgcctgttcaacccgc
tgtacgtgtcaccaacagtcatcgataacataatcaccacggagcaatggaagcaggcga
aagagctcaatacaatgaccggcgagccagttgcatttccagttgaatcgcacgctcact
ttgagagtttgagaattcgaattcctgagttaaagcaaatcgatgttatattattggttt
tgaaatacttgaaccagaaaacgccaaaagacaacgaaatcggcgtgcaaaacgtgtcgg
agctgttcgatttcatgtggggatcaatgggaattccacacgaaaatgatcctgaaacta
taagatacacgtggaagagcggaacctacaacctgtac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGCCTTTTGCCGTATTTTGAACC 670 555 518 Antisense
GTATTTTGAACCAGGATATCTCCGA 344 453 531 Antisense
CCGAAGAATTTGCCTGTTCAACCCG 603 259 552 Antisense
TGTACGTGTCACCAACAGTCATCGA 573 557 578 Antisense
AAGAGCTCAATACAATGACCGGCGA 148 155 638 Antisense
ATGACCGGCGAGCCAGTTGCATTTC 552 43 652 Antisense
GTTGCATTTCCAGTTGAATCGCACG 262 439 667 Antisense
GAATCGCACGCTCACTTTGAGAGTT 307 329 682 Antisense
ATCGGCGTGCAAAACGTGTCGGAGC 117 35 796 Antisense
GGAGCTGTTCGATTTCATGTGGGGA 656 521 816 Antisense
GAAGAGCGGAACCTACAACCTGTAC 538 337 891 Antisense
Sequence Source Affymetrix Proprietary Database