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[183835_at]

Description C42C1.6 /REP_DB=WormBase Gene ID /WP=CE16912 /TR=O44964 /GB=AAB97542.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 27      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 12.6
(-1.5)
A 		33.3
(3)
A 		5.8
(-3)
A 		16.5
(-0.7)
A 		28
B 9.6
(-1.5)
A 		25.6
(3)
A 		14.5
(-0.2)
A 		4.5
(-3)
A 		21
C 5.7
(-3)
A 		13.9
(-2.3)
A 		6.2
(-3)
A 		73.3
(3)
A 		68
avr 9.3
(-2.9) 		24.3
(1.1) 		8.8
(-3) 		31.4
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 7.9
(-3)
A 		16.3
(0.5)
A 		10
(-2.1)
A 		14.9
(-0.1)
A 		22.5
(3)
A 		11.1
(-1.7)
A 		15
B 11.8
(2.6)
A 		2.8
(-3)
A 		8.8
(0.7)
A 		12.5
(3)
A 		10.4
(1.7)
A 		8.5
(0.5)
A 		10
C 21.6
(3)
A 		14.7
(0.8)
A 		17.4
(1.7)
A 		9.8
(-0.8)
A 		2.9
(-3)
A 		7.1
(-1.7)
A 		19
avr 13.8
(3) 		11.3
(-0.1) 		12.1
(0.9) 		12.4
(1.3) 		11.9
(0.7) 		8.9
(-3) 		5
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 4.6
(0.3)
A 		7.2
(3)
A 		1.5
(-3)
A 		2.4
(-2.1)
A 		6
B 3.1
(-0.6)
A 		6.3
(3)
A 		3.4
(-0.3)
A 		1
(-3)
A 		5
C 1.9
(-3)
A 		4
(-1.8)
A 		2.2
(-2.8)
A 		12.4
(3)
A 		11
avr 3.2
(-1.6) 		5.8
(3) 		2.4
(-3) 		5.3
(2.1) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 1.5
(-3)
A 		5.8
(1.9)
A 		2.2
(-2.2)
A 		3.8
(-0.4)
A 		6.8
(3)
A 		2.7
(-1.6)
A 		5
B 4.1
(2.8)
A 		0.9
(-3)
A 		2.1
(-0.8)
A 		3.3
(1.4)
A 		4.2
(3)
A 		3.2
(1.2)
A 		3
C 8
(3)
A 		4.5
(0)
A 		4.4
(-0)
A 		2
(-2.1)
A 		0.9
(-3)
A 		2.4
(-1.7)
A 		7
avr 4.5
(3) 		3.7
(0.2) 		2.9
(-2.6) 		3
(-2.3) 		4
(1.2) 		2.8
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183835_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9094
Sequence Type Exemplar sequence
Representative Public ID C42C1.6 NCBI
Target Description C42C1.6 /REP_DB=WormBase Gene ID /WP=CE16912 /TR=O44964 /GB=AAB97542.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069942(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069942 NCBI Caenorhabditis elegans C42C1.6 (C42C1.6) mRNA, complete cds. 11/11 None
C42C1.6 ENSEMBL cdna:known chromosome:CEL140:IV:12293757:12295408:-1 gene:C42C1.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027945 8/11 Cross Hyb Matching Probes None
Y105C5A.21 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12293762-12295414(-) 100.0 100.0
chrIV:15782412-15783254(-) 91.52 91.52
Public Domain and Genome References
Gene Title
Ensembl C42C1.6
Entrez Gene 353432 Entrez gene
SwissProt O44964 EMBL-EBI
WormBase CE16912 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_502343 C42C1.6 [Caenorhabditis elegans] gb|AAB97542.1| Hypothetical protein C42C1.6 [Caenorhabditis elegans] 1.0E-111
Sequence
Target Sequence 
>C. ELEGANS:183835_AT
tgaggaatatgacacgccaccgagcaactcaagggctcacatcgattccggacagggcag
gggacgacaggcagtggagaaggtcggggatcgacgtgggaattctcagaatatccacac
gactgacctcaaactagttcaacttcttcaggtattcaggaggccaaggaaattgcagat
cgtttgtagttggatggaagcgatggtggtcagactggaagaaactgaggaaatcgagaa
gacatgttcgtgtggggtaactgacgaatacaagttaccaggatcgagacacgttggttt
accatttgtgttcactcacaaacttcagcacagctcaagcaacgtccaacaagctcagca
cgttcaacaagttcaacaacatcagcagcttctgcagcacattcaacgttacaacgacgt
tatcgacatcgaacgatcgggcagacgacttaataaatttccccaattttcactgttcgt
ggccctcgtatcgttcaagttgtgcgcctggcgcccaactgcccctaatttcttacatct
gtcacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGGAATATGACACGCCACCGAGC 595 567 117 Antisense
GCAACTCAAGGGCTCACATCGATTC 256 319 140 Antisense
GGGGATCGACGTGGGAATTCTCAGA 701 497 202 Antisense
TCCACACGACTGACCTCAAACTAGT 485 587 230 Antisense
TGGTTTACCATTTGTGTTCACTCAC 299 551 411 Antisense
TCAGCACAGCTCAAGCAACGTCCAA 346 625 441 Antisense
GTCCAACAAGCTCAGCACGTTCAAC 311 477 460 Antisense
CAGCTTCTGCAGCACATTCAACGTT 472 203 502 Antisense
TCCCCAATTTTCACTGTTCGTGGCC 301 269 576 Antisense
GCCCTCGTATCGTTCAAGTTGTGCG 54 283 598 Antisense
CCCCTAATTTCTTACATCTGTCACG 64 261 638 Antisense
Sequence Source Affymetrix Proprietary Database