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[183834_at]

Description F56F12.1 /REP_DB=WormBase Gene ID /WP=CE23785 /TR=Q9U3E3 /GB=CAB54978.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 14      4grp_total > 52      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 187
1 2 3 4 range
A 174.1
(3)
P 		164.9
(2.6)
P 		64.5
(-1.8)
A 		37.3
(-3)
A 		137
B 172.4
(2)
P 		204.4
(3)
P 		148.7
(1.2)
P 		17.9
(-3)
A 		187
C 200.4
(3)
P 		194.5
(2.7)
P 		163.8
(1.4)
P 		62.1
(-3)
A 		138
avr 182.3
(2.8) 		187.9
(3) 		125.7
(0.5) 		39.1
(-3) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 250
1 2 3 4 5 6 range
A 239.2
(2.6)
P 		255.4
(3)
P 		85.2
(-1.1)
A 		105.5
(-0.6)
P 		86.1
(-1.1)
P 		5.5
(-3)
A 		250
B 203.2
(3)
P 		184.7
(2.4)
P 		104.3
(-0)
A 		108.4
(0.1)
P 		31.7
(-2.3)
A 		8.5
(-3)
A 		195
C 248.8
(3)
P 		195
(1.5)
P 		148.3
(0.3)
P 		127.7
(-0.3)
M 		84.1
(-1.5)
A 		27
(-3)
A 		222
avr 230.4
(3) 		211.7
(2.5) 		112.6
(-0.3) 		113.9
(-0.2) 		67.3
(-1.5) 		13.7
(-3) 		217
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 63.4
(3)
P 		35.8
(0.1)
P 		16.9
(-1.8)
A 		5.5
(-3)
A 		58
B 55
(3)
P 		50.5
(2.5)
P 		34.5
(0.6)
P 		3.8
(-3)
A 		51
C 66.3
(3)
P 		55.9
(1.9)
P 		57.1
(2)
P 		10.5
(-3)
A 		56
avr 61.6
(3) 		47.4
(1.5) 		36.2
(0.2) 		6.6
(-3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 44.1
(-0.1)
P 		90.8
(3)
P 		18.5
(-1.8)
A 		26.8
(-1.3)
P 		26
(-1.3)
P 		1.3
(-3)
A 		90
B 70.7
(3)
P 		61.5
(2.2)
P 		25.3
(-1)
A 		28.7
(-0.7)
P 		12.9
(-2.1)
A 		3.2
(-3)
A 		68
C 92.2
(3)
P 		59.5
(0.6)
P 		37.7
(-0.9)
P 		25.7
(-1.8)
M 		27.2
(-1.7)
A 		9
(-3)
A 		83
avr 69
(2.9) 		70.6
(3) 		27.2
(-0.9) 		27.1
(-0.9) 		22
(-1.4) 		4.5
(-3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183834_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9434
Sequence Type Exemplar sequence
Representative Public ID F56F12.1 NCBI
Target Description F56F12.1 /REP_DB=WormBase Gene ID /WP=CE23785 /TR=Q9U3E3 /GB=CAB54978.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070251(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070251 NCBI Caenorhabditis elegans F56F12.1 (F56F12.1) mRNA, complete cds. 11/11 None
SNAP00000039300 ENSEMBL cdna:SNAP chromosome:CEL140:IV:13753024:13756027:1 11/11 None
GENEFINDER00000039301 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13753257:13756004:1 11/11 None
F56F12.1 ENSEMBL cdna:known chromosome:CEL140:IV:13753257:13756027:1 gene:F56F12.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13753262-13756033(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F56F12.1
Entrez Gene 178341 Entrez gene
SwissProt Q9U3E3 EMBL-EBI
WormBase CE23785 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54978 Hypothetical protein F56F12.1 [Caenorhabditis elegans] ref|NP_502652.1| F56F12.1 [Caenorhabditis elegans] 2.0E-52
blast CAB54978 Hypothetical protein F56F12.1 [Caenorhabditis elegans] ref|NP_502652.1| F56F12.1 [Caenorhabditis elegans] 4.0E-52
blast CAB54978 Hypothetical protein F56F12.1 [Caenorhabditis elegans] ref|NP_502652.1| F56F12.1 [Caenorhabditis elegans] 2.0E-48
Sequence
Target Sequence 
>C. ELEGANS:183834_AT
ttgaacgactcactgaaccaagccttcgaaattgcatcttcaattgaaacaactaaaaat
gcttatgaagcaccgccaactccaaaaagtgcatcacacgaccgctcgatttcggacaca
tatccagtgtcttcctccaccacttccacttggccttcccatacaacaacacctactaca
actacagctgctgctccaattgctgctgttgctccacaaacatacacagagcagcagcca
atgagcacatcaatgagctcgtcggtaatgagtactaatatggatgagcctattgttgtt
ggttcacaccaacaaatacctcaacaaagccccgattcatcaccggaacgaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAACGACTCACTGAACCAAGCCT 413 701 61 Antisense
ACCAAGCCTTCGAAATTGCATCTTC 202 85 77 Antisense
CAAAAAGTGCATCACACGACCGCTC 316 191 143 Antisense
GACCGCTCGATTTCGGACACATATC 217 383 160 Antisense
GACACATATCCAGTGTCTTCCTCCA 281 367 175 Antisense
AACACCTACTACAACTACAGCTGCT 257 137 228 Antisense
CTGCTGTTGCTCCACAAACATACAC 377 237 263 Antisense
AGAGCAGCAGCCAATGAGCACATCA 514 67 288 Antisense
GCACATCAATGAGCTCGTCGGTAAT 260 315 305 Antisense
GAGCCTATTGTTGTTGGTTCACACC 572 383 346 Antisense
CCCCGATTCATCACCGGAACGAAAT 508 251 390 Antisense
Sequence Source Affymetrix Proprietary Database