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[183833_at]

Description C31A11.1 /REP_DB=WormBase Gene ID /WP=CE15653 /TR=O17856 /GB=CAB07609.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 24      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 2.6
(-3)
A 		5.1
(3)
A 		5
(2.8)
A 		3.1
(-1.8)
A 		3
B 2.6
(-2.7)
A 		6.4
(-1.6)
A 		22.1
(3)
A 		1.4
(-3)
A 		21
C 17.3
(0.8)
A 		13.4
(-0.1)
A 		1.6
(-3)
A 		26.4
(3)
A 		25
avr 7.5
(-3) 		8.3
(-1.3) 		9.6
(1.5) 		10.3
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 4.7
(-2.7)
A 		3.3
(-3)
A 		26.9
(2.9)
A 		3.6
(-2.9)
A 		27.5
(3)
A 		14.6
(-0.2)
A 		24
B 6.2
(-1.1)
A 		8.8
(0.7)
A 		12
(3)
A 		5.2
(-1.9)
A 		3.6
(-3)
A 		11.6
(2.7)
A 		8
C 21.2
(-0.9)
A 		3.8
(-2.9)
A 		14.7
(-1.6)
A 		55.9
(3)
A 		12.8
(-1.9)
A 		2.6
(-3)
A 		53
avr 10.7
(-1) 		5.3
(-3) 		17.9
(1.6) 		21.6
(3) 		14.6
(0.4) 		9.6
(-1.4) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.9
(0.3)
A 		1.1
(1.7)
A 		1.3
(3)
A 		0.4
(-3)
A 		1
B 0.8
(-2.4)
A 		1.6
(-1.4)
A 		5.1
(3)
A 		0.3
(-3)
A 		5
C 5.7
(3)
A 		3.8
(0.8)
A 		0.6
(-3)
A 		4.4
(1.5)
A 		5
avr 2.5
(3) 		2.2
(0.8) 		2.3
(1.5) 		1.7
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.9
(-3)
A 		1.2
(-2.8)
A 		5.9
(1.1)
A 		0.9
(-3)
A 		8.3
(3)
A 		3.6
(-0.8)
A 		7
B 2.2
(-1.3)
A 		2.9
(0.1)
A 		2.9
(0.1)
A 		1.4
(-3)
A 		1.5
(-2.8)
A 		4.3
(3)
A 		3
C 7.9
(1.1)
A 		1.2
(-2.8)
A 		3.7
(-1.4)
A 		11.2
(3)
A 		4.1
(-1.1)
A 		0.9
(-3)
A 		10
avr 3.7
(1.1) 		1.8
(-3) 		4.2
(2.1) 		4.5
(2.8) 		4.6
(3) 		2.9
(-0.6) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183833_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13340
Sequence Type Exemplar sequence
Representative Public ID C31A11.1 NCBI
Target Description C31A11.1 /REP_DB=WormBase Gene ID /WP=CE15653 /TR=O17856 /GB=CAB07609.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074713(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074713 NCBI Caenorhabditis elegans C31A11.1 (C31A11.1) mRNA, complete cds. 11/11 None
SNAP00000000580 ENSEMBL cdna:SNAP chromosome:CEL140:V:16296176:16298183:1 11/11 None
GENEFINDER00000000587 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:16296167:16298183:1 11/11 None
C31A11.1 ENSEMBL cdna:known chromosome:CEL140:V:16295336:16298183:1 gene:C31A11.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:16295335-16298183(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C31A11.1
Entrez Gene 183069 Entrez gene
SwissProt O17856 EMBL-EBI
WormBase CE15653 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
16747 transferase activity, transferring groups other than amino-acyl groups inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07609 Hypothetical protein C31A11.1 [Caenorhabditis elegans] emb|CAB05693.1| Hypothetical protein C31A11.1 [Caenorhabditis elegans] ref|NP_507114.1| C31A11.1 [Caenorhabditis elegans] 0.0
blast CAB05687 Hypothetical protein C31A11.5 [Caenorhabditis elegans] ref|NP_507118.1| C31A11.5 [Caenorhabditis elegans] 0.0
blast CAB07608 Hypothetical protein F28G4.5 [Caenorhabditis elegans] ref|NP_507113.1| F28G4.5 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.3E-8
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.3E-8
Pfam IPR002656 EMBL-EBI Acyltransferase 3 family 1.3E-8
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507114.1 11 192-214,266-285,305-327,350-372,413-435,442-464,487-504,516-538,553-572,616-638,643-665
C31A11.1 11 192-214,266-285,305-327,350-372,413-435,442-464,487-504,516-538,553-572,616-638,643-665
SNAP00000000580 10 63-82,102-124,147-169,210-232,239-261,284-301,313-335,350-369,413-435,440-462
GENEFINDER00000000587 10 50-69,89-111,134-156,209-231,238-260,280-299,308-330,345-364,408-430,435-457
Sequence
Target Sequence 
>C. ELEGANS:183833_AT
tttcgctggcagctatatgcatattttcaacttatgattatgataataaagttaattgga
gtatcttctcccgtgcaacctatttcaacttctctcgtctggcctggtcttttgcactct
cctgggttattgttgcaaatcacatgggatggggaggtaccgtgtatctacaagaactag
aatcagaaatttccttttcaggaccaattgacgccttcatgtcccatccaatttggcagc
catttggtagactttcttattgcgcctacattgttcattacgttgtattatacatgtacc
taatgatcggagtcggtcctctccatttttattcttctttccaacttttcatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTCGCTGGCAGCTATATGCATATT 214 669 1592 Antisense
GGTTATTGTTGCAAATCACATGGGA 117 507 1716 Antisense
GGATGGGGAGGTACCGTGTATCTAC 206 509 1738 Antisense
GAGGTACCGTGTATCTACAAGAACT 129 403 1745 Antisense
GAATCAGAAATTTCCTTTTCAGGAC 630 327 1771 Antisense
TTCAGGACCAATTGACGCCTTCATG 623 677 1788 Antisense
TTGGCAGCCATTTGGTAGACTTTCT 635 707 1824 Antisense
GGTAGACTTTCTTATTGCGCCTACA 131 505 1837 Antisense
GTATTATACATGTACCTAATGATCG 263 453 1876 Antisense
TAATGATCGGAGTCGGTCCTCTCCA 146 635 1892 Antisense
TATTCTTCTTTCCAACTTTTCATGT 126 663 1921 Antisense
Sequence Source Affymetrix Proprietary Database