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[183832_at]

Description Y94A7B.8 /REP_DB=WormBase Gene ID /WP=CE26313 /TR=Q9GRU8 /GB=CAC15865.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 23      4grp_total > 24      6grp_cgc > 61      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 67
1 2 3 4 range
A 8
(-3)
A 		12.6
(-2.3)
A 		13.2
(-2.2)
A 		48.6
(3)
A 		41
B 24.9
(-2.8)
A 		36.3
(-1.5)
A 		74.9
(3)
A 		22.9
(-3)
A 		52
C 8
(-3)
A 		9.4
(-2.8)
A 		9.2
(-2.8)
A 		46
(3)
A 		38
avr 13.6
(-3) 		19.4
(-1.6) 		32.4
(1.4) 		39.2
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 50
1 2 3 4 5 6 range
A 42.8
(1.6)
A 		24.1
(-1)
A 		22
(-1.3)
A 		25.7
(-0.7)
A 		52.7
(3)
A 		9.4
(-3)
A 		43
B 22.7
(-0.7)
A 		45.3
(3)
A 		35
(1.3)
A 		8.3
(-3)
A 		8.3
(-3)
A 		29.5
(0.4)
A 		37
C 24.6
(1.5)
A 		22.2
(1)
A 		30.5
(2.8)
A 		31.5
(3)
A 		3.1
(-3)
A 		5.8
(-2.4)
A 		28
avr 30
(2.8) 		30.5
(3) 		29.2
(2.5) 		21.8
(-0.3) 		21.4
(-0.5) 		14.9
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 2.9
(-2.7)
A 		2.7
(-3)
A 		3.4
(-2)
A 		7.1
(3)
A 		4
B 7.9
(-1.5)
A 		9
(-1)
A 		17.3
(3)
A 		4.9
(-3)
A 		12
C 2.7
(-3)
A 		2.7
(-3)
A 		3.2
(-2.4)
A 		7.8
(3)
A 		5
avr 4.5
(-3) 		4.8
(-2.5) 		8
(3) 		6.6
(0.6) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 7.9
(-0.5)
A 		8.6
(-0.2)
A 		4.8
(-1.9)
A 		6.5
(-1.1)
A 		15.9
(3)
A 		2.3
(-3)
A 		14
B 7.9
(-0.3)
A 		15.1
(3)
A 		8.5
(-0.1)
A 		2.2
(-3)
A 		3.4
(-2.4)
A 		11
(1.1)
A 		13
C 9.1
(3)
A 		6.8
(1.3)
A 		7.8
(2)
A 		6.3
(0.9)
A 		1
(-3)
A 		1.9
(-2.3)
A 		8
avr 8.3
(0.8) 		10.2
(3) 		7
(-0.7) 		5
(-3) 		6.8
(-0.9) 		5.1
(-2.9) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183832_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13762
Sequence Type Exemplar sequence
Representative Public ID Y94A7B.8 NCBI
Target Description Y94A7B.8 /REP_DB=WormBase Gene ID /WP=CE26313 /TR=Q9GRU8 /GB=CAC15865.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075099(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075099 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-301) (srh-301) mRNA, complete cds. 11/11 None
GENEFINDER00000042700 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17827486:17835910:1 11/11 None
Y94A7B.8 ENSEMBL cdna:known chromosome:CEL140:V:17827486:17830350:1 gene:Y94A7B.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17827485-17830350(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-301
Ensembl Y94A7B.8
Entrez Gene 190797 Entrez gene
SwissProt Q9GRU8 EMBL-EBI
WormBase CE33004 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC15865 Hypothetical protein Y94A7B.8 [Caenorhabditis elegans] ref|NP_507500.2| Serpentine Receptor, class H family member (srh-301) [Caenorhabditis elegans] 0.0
blast CAC15865 Hypothetical protein Y94A7B.8 [Caenorhabditis elegans] ref|NP_507500.2| Serpentine Receptor, class H family member (srh-301) [Caenorhabditis elegans] 1.0E-179
blast CAC15863 Hypothetical protein Y94A7B.7 [Caenorhabditis elegans] ref|NP_507502.1| Serpentine Receptor, class H family member (srh-303) [Caenorhabditis elegans] 1.0E-161
blast CAC15864 Hypothetical protein Y94A7B.9 [Caenorhabditis elegans] ref|NP_507501.1| Serpentine Receptor, class H family member (srh-304) [Caenorhabditis elegans] 1.0E-128
blast CAA19562 Hypothetical protein Y94A7B.6 [Caenorhabditis elegans] ref|NP_507499.1| Serpentine Receptor, class H family member (srh-300) [Caenorhabditis elegans] 1.0E-106
blast CAC15863 Hypothetical protein Y94A7B.7 [Caenorhabditis elegans] ref|NP_507502.1| Serpentine Receptor, class H family member (srh-303) [Caenorhabditis elegans] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 7.1E-38
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507500.2 7 10-32,45-67,87-109,130-152,195-217,247-269,279-298
Y94A7B.8 7 10-32,45-67,87-109,130-152,195-217,247-269,279-298
GENEFINDER00000042700 15 10-32,45-67,87-109,130-152,195-217,247-269,279-298,361-383,496-518,531-553,576-596,617-634,677-699,726-748,758-780
Sequence
Target Sequence 
>C. ELEGANS:183832_AT
attacacactttctttggctttttgcattccagttcacctagaagttccgccagatcagg
agaaagccaggcgcatgttattcgaaatgtacccgcaggcttgtgatagcataactgata
aatcgttaatatctgttgcaaattttggtaacagcggttggacgaacatacgggaaaatt
ctctgacatgctttgtgctactcgagattatattttttgttgtattgataagggtgaaaa
tgaatagagccctaaaaaatatcagatcatcattatctcttaacacacttgaaactcaaa
agaaattcattcgagccttgaaactacagattgctattccaattctcattatattcctcc
cagccacaattgccgctgttctagccatgcaaagttccagccaacaggaagttcataacc
taataaccttactcatatctcttcatggagtatccgctacaatccttatgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTACACACTTTCTTTGGCTTTTTG 140 13 485 Antisense
TTGGCTTTTTGCATTCCAGTTCACC 582 705 499 Antisense
TTCACCTAGAAGTTCCGCCAGATCA 215 685 518 Antisense
GAAAGCCAGGCGCATGTTATTCGAA 399 359 546 Antisense
AATGTACCCGCAGGCTTGTGATAGC 627 163 570 Antisense
GACATGCTTTGTGCTACTCGAGATT 1 371 669 Antisense
TCCAATTCTCATTATATTCCTCCCA 575 587 822 Antisense
CAGCCACAATTGCCGCTGTTCTAGC 450 201 845 Antisense
CTAGCCATGCAAAGTTCCAGCCAAC 61 225 865 Antisense
AATAACCTTACTCATATCTCTTCAT 384 171 906 Antisense
GAGTATCCGCTACAATCCTTATGAT 493 397 932 Antisense
Sequence Source Affymetrix Proprietary Database