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[183831_at]

Description C08F11.9 /REP_DB=WormBase Gene ID /WP=CE17386 /TR=O62051 /GB=CAB05676.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 12      6grp_cgc > 99      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 72
1 2 3 4 range
A 1.9
(-2.8)
A 		7.6
(-1.6)
A 		1.1
(-3)
A 		29.8
(3)
A 		29
B 5.1
(-3)
A 		15.1
(3)
A 		6.4
(-2.2)
A 		14.9
(2.9)
A 		10
C 32.5
(-0.5)
A 		5.8
(-2.7)
A 		2.8
(-3)
A 		73.3
(3)
P 		71
avr 13.2
(-1.4) 		9.5
(-2) 		3.4
(-3) 		39.3
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 10.7
(-2.2)
A 		5.7
(-3)
A 		33.9
(1.5)
P 		9.9
(-2.3)
A 		42.9
(3)
A 		11.5
(-2.1)
A 		37
B 22.3
(3)
A 		12.7
(-0.4)
A 		5.6
(-3)
A 		5.5
(-3)
A 		11.9
(-0.7)
A 		21
(2.5)
A 		17
C 10.1
(0.8)
A 		15
(3)
A 		3.3
(-2.3)
A 		4.4
(-1.8)
A 		1.7
(-3)
A 		6.6
(-0.8)
A 		13
avr 14.4
(0.8) 		11.1
(-0.8) 		14.3
(0.8) 		6.6
(-3) 		18.8
(3) 		13
(0.1) 		12
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 0.7
(-2.4)
A 		1.7
(-1)
A 		0.3
(-3)
A 		4.4
(3)
A 		4
B 1.6
(-2.7)
A 		3.7
(3)
A 		1.5
(-3)
A 		3.2
(1.6)
A 		2
C 10.8
(2.2)
A 		1.7
(-2.6)
A 		1
(-3)
A 		12.4
(3)
P 		11
avr 4.4
(0.6) 		2.4
(-1.4) 		0.9
(-3) 		6.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 2
(-3)
A 		2
(-3)
A 		7.4
(-0.1)
P 		2.5
(-2.7)
A 		13
(3)
A 		2.8
(-2.6)
A 		11
B 7.8
(3)
A 		4.2
(-0.4)
A 		1.4
(-3)
A 		1.4
(-3)
A 		4.8
(0.2)
A 		7.8
(3)
A 		6
C 3.8
(1.8)
A 		4.6
(3)
A 		0.8
(-2.7)
A 		0.9
(-2.6)
A 		0.6
(-3)
A 		2.2
(-0.6)
A 		4
avr 4.5
(0.9) 		3.6
(-0.3) 		3.2
(-0.9) 		1.6
(-3) 		6.1
(3) 		4.3
(0.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183831_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9181
Sequence Type Exemplar sequence
Representative Public ID C08F11.9 NCBI
Target Description C08F11.9 /REP_DB=WormBase Gene ID /WP=CE17386 /TR=O62051 /GB=CAB05676.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070233(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070233 NCBI Caenorhabditis elegans Serpentine Receptor, class Z family member (srz-29) (srz-29) mRNA, complete cds. 9/11 None
C08F11.9 ENSEMBL cdna:known chromosome:CEL140:IV:13644432:13645892:-1 gene:C08F11.9 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13644437-13645898(-) 96.15 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srz-29
Ensembl C08F11.9
Entrez Gene 182423 Entrez gene
SwissProt O62051 EMBL-EBI
WormBase CE35388 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05676 Hypothetical protein C08F11.9 [Caenorhabditis elegans] ref|NP_502634.2| Serpentine Receptor, class Z family member (srz-29) [Caenorhabditis elegans] 1.0E-144
blast CAE68105 Hypothetical protein CBG13745 [Caenorhabditis briggsae] 2.0E-39
blast CAB11536 Hypothetical protein H12I19.2 [Caenorhabditis elegans] ref|NP_502708.1| Serpentine Receptor, class Z family member (srz-31) [Caenorhabditis elegans] 2.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.8E-101
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502634.2 7 20-42,72-89,99-121,153-175,190-212,233-255,265-287
C08F11.9 7 20-42,72-89,99-121,153-175,190-212,233-255,265-287
Sequence
Target Sequence 
>C. ELEGANS:183831_AT
gctatattactatccatcaacggggaaacatgtcaaatctgtacaaatgataattttcaa
gaaaatcaaatacatttatgcagttttcgcaatgaaagaagttatatgtctatgcatttt
tgtagtatgcaattcaattggatgttctggtagaaaaaaattactcgctgaaatggttta
tttttcaacgtttagtgtgcttaatttattaatactaatagcttcttttctttatttacc
aattactataagtatacataagttatcccggttatcgactaatcaagagagaaataaacc
gcaaaaatatattttatggcaaacaatattcatttttctgtcgaaagctgtgagtttgtg
tttaaaatataaaaagtataataattatgtttttattaaggtgttcattcctgctttcat
tgtattagctttgcctagtactgattttgtcaatagtttggttttgatggttgtaacaga
tgtattagttgtaccattaataattcaaatatcatatttatgttgcaacaaacgcaattt
aacagttttgttgtcatctttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTATATTACTATCCATCAACGGGG 665 303 399 Antisense
TCAACGGGGAAACATGTCAAATCTG 687 627 415 Antisense
AATTACTCGCTGAAATGGTTTATTT 487 175 557 Antisense
TATTTTTCAACGTTTAGTGTGCTTA 304 661 577 Antisense
TAGCTTCTTTTCTTTATTTACCAAT 428 651 617 Antisense
GTTATCCCGGTTATCGACTAATCAA 305 289 660 Antisense
GTCGAAAGCTGTGAGTTTGTGTTTA 430 473 738 Antisense
TAAGGTGTTCATTCCTGCTTTCATT 407 637 795 Antisense
GTTCATTCCTGCTTTCATTGTATTA 203 445 801 Antisense
GTATTAGCTTTGCCTAGTACTGATT 519 453 820 Antisense
TAACAGTTTTGTTGTCATCTTTCAA 663 639 938 Antisense
Sequence Source Affymetrix Proprietary Database