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[183829_at]

Description F42G8.9 /REP_DB=WormBase Gene ID /WP=CE17068 /TR=O44506 /GB=AAB92068.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 26      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 68
1 2 3 4 range
A 5.4
(-3)
A 		49.3
(3)
A 		10.3
(-2.3)
A 		12.8
(-2)
A 		44
B 12.6
(-1.4)
A 		12
(-1.5)
A 		27.4
(3)
A 		7
(-3)
A 		20
C 12.7
(-2.3)
A 		5.1
(-3)
A 		6.6
(-2.9)
A 		73.4
(3)
A 		68
avr 10.2
(-3) 		22.1
(0.4) 		14.8
(-1.7) 		31.1
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 69
1 2 3 4 5 6 range
A 7.7
(-2.8)
A 		11.4
(-2.4)
A 		5.7
(-3)
A 		42.2
(0.7)
A 		28.5
(-0.7)
A 		65.7
(3)
A 		60
B 5.6
(-3)
A 		6.8
(-2.9)
A 		6.9
(-2.9)
A 		6.7
(-2.9)
A 		62
(2.3)
A 		69
(3)
M 		63
C 25
(-1.5)
A 		8.7
(-3)
A 		40.9
(-0)
A 		20.2
(-1.9)
A 		16
(-2.3)
A 		74.1
(3)
P 		65
avr 12.8
(-2.6) 		9
(-3) 		17.8
(-2.1) 		23
(-1.6) 		35.5
(-0.4) 		69.6
(3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2
(-2.9)
A 		10.7
(3)
A 		2.7
(-2.5)
A 		1.9
(-3)
A 		9
B 4
(0.1)
A 		3
(-1.1)
A 		6.3
(3)
A 		1.5
(-3)
A 		5
C 4.2
(-1.5)
A 		1.5
(-3)
A 		2.3
(-2.6)
A 		12.4
(3)
A 		11
avr 3.4
(-3) 		5.1
(2.4) 		3.8
(-1.7) 		5.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 1.4
(-3)
A 		4
(-1.9)
A 		1.3
(-3)
A 		10.7
(0.8)
A 		8.6
(-0)
A 		16
(3)
A 		15
B 1.9
(-3)
A 		2.3
(-2.9)
A 		1.7
(-3)
A 		1.8
(-3)
A 		25.2
(2.9)
A 		25.7
(3)
M 		24
C 9.2
(-1.2)
A 		2.7
(-3)
A 		10.4
(-0.9)
A 		4.1
(-2.6)
A 		5.2
(-2.3)
A 		24.8
(3)
P 		22
avr 4.2
(-2.6) 		3
(-3) 		4.5
(-2.5) 		5.5
(-2.2) 		13
(0.1) 		22.2
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183829_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8690
Sequence Type Exemplar sequence
Representative Public ID F42G8.9 NCBI
Target Description F42G8.9 /REP_DB=WormBase Gene ID /WP=CE17068 /TR=O44506 /GB=AAB92068.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068954(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068954 NCBI Caenorhabditis elegans F42G8.9 (F42G8.9) mRNA, complete cds. 11/11 None
SNAP00000028270 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8117348:8118426:1 11/11 None
GENEFINDER00000028287 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8116214:8121318:1 11/11 None
F42G8.9 ENSEMBL cdna:known chromosome:CEL140:IV:8115749:8118426:1 gene:F42G8.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8116195-8118432(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F42G8.9
Entrez Gene 177605 Entrez gene
SwissProt O44506 EMBL-EBI
WormBase CE31697 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB92068 Hypothetical protein F42G8.9 [Caenorhabditis elegans] ref|NP_501355.2| F42G8.9 [Caenorhabditis elegans] 0.0
blast AAB92072 Hypothetical protein F42G8.8 [Caenorhabditis elegans] ref|NP_501356.1| F42G8.8 [Caenorhabditis elegans] 0.0
blast CAA94346 Hypothetical protein F49E11.7 [Caenorhabditis elegans] ref|NP_502500.1| F49E11.7 [Caenorhabditis elegans] 1.0E-134
blast AAB92068 Hypothetical protein F42G8.9 [Caenorhabditis elegans] ref|NP_501355.2| F42G8.9 [Caenorhabditis elegans] 1.0E-112
Protein Domains
Database ID Description E-Value
Pfam IPR004843 EMBL-EBI Metallo-phosphoesterase 3.8E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501355.2 1 327-349
F42G8.9 1 327-349
SNAP00000028270 1 172-194
Sequence
Target Sequence 
>C. ELEGANS:183829_AT
aaactcgagtccatcggtggtgctcttgtcgtttcaaatgtgggctcagatgttgatatt
gtcttcgaaagtctgaaggaaattggcaaacatttaatggttgactcactttctagcgtt
caaattacaagtaatagagcaaataatattaaactgccatcgatcgatttgggcggaaag
aaaagcgtaacaatttcggatgaaaagaagttatcatccaataatagtgaacatctaaat
gttacaatcaacagcgacagtgtcggaactttcaattcaatggaaaagatagaaccacga
gtttcagtgagcttggataaactgaatgaaaatggaaaagtggaaacggagaaagattta
aaaaagaagaatttcaacttttcggttcacaaatttatccaggaaccaatatttgatgga
ataattgttactctcattcaaatttccccacttctggtagttattggttttattggatca
acagcttttctcattcacggctcacgaaaacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAACTCGAGTCCATCGGTGGTGCTC 616 125 781 Antisense
GGTGCTCTTGTCGTTTCAAATGTGG 275 501 799 Antisense
GGGCTCAGATGTTGATATTGTCTTC 526 493 822 Antisense
AATGGTTGACTCACTTTCTAGCGTT 438 163 876 Antisense
AACTGCCATCGATCGATTTGGGCGG 432 141 932 Antisense
GCGACAGTGTCGGAACTTTCAATTC 291 289 1034 Antisense
GAACCACGAGTTTCAGTGAGCTTGG 706 343 1072 Antisense
CTTTTCGGTTCACAAATTTATCCAG 134 221 1158 Antisense
TCAAATTTCCCCACTTCTGGTAGTT 581 625 1218 Antisense
TGGATCAACAGCTTTTCTCATTCAC 330 551 1254 Antisense
TTCTCATTCACGGCTCACGAAAACG 688 691 1268 Antisense
Sequence Source Affymetrix Proprietary Database