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[183828_at]

Description C08F11.3 /REP_DB=WormBase Gene ID /WP=CE17381 /TR=O62049 /GB=CAB05674.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 27      6grp_high1_10_10 > 72      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 81      6grp_total > 71      4grp_total > 22      6grp_highest_sub > 03_04      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 141.9
(1.4)
P 		79.4
(-3)
P 		81.8
(-2.8)
P 		164.4
(3)
P 		85
B 150.4
(3)
P 		106.7
(-0.6)
P 		77.6
(-3)
P 		115.2
(0.1)
P 		73
C 175.5
(2.2)
P 		89.9
(-3)
P 		89.4
(-3)
P 		189.4
(3)
P 		100
avr 155.9
(3) 		92
(-2.3) 		82.9
(-3) 		156.3
(3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 372
1 2 3 4 5 6 range
A 141.6
(-2.4)
P 		199
(-1.4)
P 		443.5
(3)
P 		361.7
(1.5)
P 		248
(-0.5)
P 		111.1
(-3)
P 		332
B 149.2
(-3)
P 		275.1
(0.9)
P 		344.3
(3)
P 		341.3
(2.9)
P 		280.8
(1)
P 		231.2
(-0.5)
P 		195
C 115.6
(-3)
P 		240.7
(-1)
P 		263.9
(-0.6)
P 		483.2
(3)
P 		216
(-1.4)
P 		178.2
(-2)
P 		368
avr 135.5
(-3) 		238.3
(-0.6) 		350.6
(2) 		395.4
(3) 		248.3
(-0.4) 		173.5
(-2.1) 		260
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 51.7
(3)
P 		17.2
(-3)
P 		21.4
(-2.3)
P 		24.1
(-1.8)
P 		35
B 48
(3)
P 		26.4
(-1.3)
P 		18
(-3)
P 		24.6
(-1.7)
P 		30
C 58.1
(3)
P 		25.9
(-3)
P 		31.2
(-2)
P 		31.9
(-1.9)
P 		32
avr 52.6
(3) 		23.2
(-3) 		23.5
(-2.9) 		26.9
(-2.2) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 26.1
(-3)
P 		70.8
(0.8)
P 		96.6
(3)
P 		91.7
(2.6)
P 		74.8
(1.1)
P 		27
(-2.9)
P 		71
B 51.9
(-3)
P 		91.6
(0.8)
P 		83.6
(0.1)
P 		90.4
(0.7)
P 		114.1
(3)
P 		86.2
(0.3)
P 		62
C 42.9
(-3)
P 		73.4
(0.4)
P 		67.2
(-0.3)
P 		97.2
(3)
P 		69.9
(-0)
P 		59.7
(-1.1)
P 		54
avr 40.3
(-3) 		78.6
(1.4) 		82.5
(1.8) 		93.1
(3) 		86.3
(2.2) 		57.6
(-1) 		53
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183828_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9440
Sequence Type Exemplar sequence
Representative Public ID C08F11.3 NCBI
Target Description C08F11.3 /REP_DB=WormBase Gene ID /WP=CE17381 /TR=O62049 /GB=CAB05674.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070226(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070226 NCBI Caenorhabditis elegans C08F11.3 (C08F11.3) mRNA, complete cds. 10/11 None
GENEFINDER00000042606 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:13619667:13623103:1 10/11 None
C08F11.3 ENSEMBL cdna:known chromosome:CEL140:IV:13620253:13621482:1 gene:C08F11.3 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042596 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:13620258-13621488(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08F11.3
Entrez Gene 182419 Entrez gene
SwissProt O62049 EMBL-EBI
WormBase CE35387 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05674 Hypothetical protein C08F11.3 [Caenorhabditis elegans] ref|NP_502627.2| C08F11.3 [Caenorhabditis elegans] 1.0E-120
blast CAB05674 Hypothetical protein C08F11.3 [Caenorhabditis elegans] ref|NP_502627.2| C08F11.3 [Caenorhabditis elegans] 1.0E-118
blast CAB05673 Hypothetical protein C08F11.2 [Caenorhabditis elegans] ref|NP_502628.1| C08F11.2 [Caenorhabditis elegans] 3.0E-97
blast CAB05575 Hypothetical protein F56G4.1 [Caenorhabditis elegans] emb|CAB04489.1| Hypothetical protein F56G4.1 [Caenorhabditis elegans] ref|NP_492908.1| F56G4.1 [Caenorhabditis elegans] 2.0E-34
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502627.2 6 7-29,34-56,68-90,94-116,137-159,169-191
C08F11.3 6 7-29,34-56,68-90,94-116,137-159,169-191
GENEFINDER00000042606 10 25-47,75-94,104-123,162-184,217-239,246-268,329-346,373-395,415-434,447-469
Sequence
Target Sequence 
>C. ELEGANS:183828_AT
caccgttctcctgatagcaatgttaacgttttttgcaagtattcaagaattcaagaagga
cacttggatacagggttatggtgaggtattgctcactgagcaacagggatgcgcaaattg
gtttgttaaaatctcgattcttggcaatattcttggatcaattttcatgttcattggccc
atccgagtttttgacagttttctgctgtattctatttctaccagtcactcttcacatgag
atttgaatatttctataaaaaatcagtcaatgggacaagtcttttgagtattcaaccaac
acgagatgtcttgaaaaaactgtttgagtacattcttttgacgatttgctttgtttggac
attgataataattacaattcggaatcttgttgagtggacgtgcgattccaacattttcac
ttttttgattattttctatttagtttttattttgcgatttacgtacattcatgtcattac
aaagcgggatgtatttggaacttttaaaaagacaaaaaatgtcaatttattaatgtattc
tagaagaggcaaaggttcactgttattacg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCGTTCTCCTGATAGCAATGTTA 440 201 138 Antisense
GCTCACTGAGCAACAGGGATGCGCA 353 301 228 Antisense
AATTTTCATGTTCATTGGCCCATCC 463 175 297 Antisense
GCCCATCCGAGTTTTTGACAGTTTT 275 287 314 Antisense
TCTGCTGTATTCTATTTCTACCAGT 381 609 338 Antisense
TTCTACCAGTCACTCTTCACATGAG 85 691 353 Antisense
GAGTACATTCTTTTGACGATTTGCT 640 399 463 Antisense
GGAATCTTGTTGAGTGGACGTGCGA 257 533 518 Antisense
GCGATTCCAACATTTTCACTTTTTT 23 291 539 Antisense
TTGCGATTTACGTACATTCATGTCA 426 703 589 Antisense
GAGGCAAAGGTTCACTGTTATTACG 551 401 683 Antisense
Sequence Source Affymetrix Proprietary Database