[Home] | [Total List]

[183827_at]

Description K01A2.5 /REP_DB=WormBase Gene ID /WP=CE19513 /TR=Q9TZ58 /GB=AAC69505.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 43      4grp_highest_8_8 > 02      4grp_high_8_8 > 54      6grp_highest_nonorm > 53      6grp_total > 20      4grp_total > 49      6grp_highest_sub > 03      6grp_high1_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1220
1 2 3 4 range
A 317.2
(-3)
P 		1096
(2.2)
P 		1209.6
(3)
P 		409.8
(-2.4)
P 		892
B 316.7
(-2.6)
P 		1253.3
(3)
P 		1240.3
(2.9)
P 		258
(-3)
P 		995
C 285.6
(-2.7)
P 		1293.3
(2.2)
P 		1446.2
(3)
P 		226.1
(-3)
P 		1220
avr 306.5
(-2.9) 		1214.2
(2.5) 		1298.7
(3) 		298
(-3) 		1001

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 538
1 2 3 4 5 6 range
A 498
(-3)
P 		952.1
(2.1)
P 		1028.9
(3)
P 		877.1
(1.3)
P 		655.2
(-1.2)
P 		553.4
(-2.4)
P 		531
B 570.1
(-3)
P 		853.8
(2.8)
P 		703.3
(-0.3)
P 		852.2
(2.7)
P 		865.3
(3)
P 		622.8
(-1.9)
P 		295
C 491.2
(-3)
P 		990.5
(3)
P 		882
(1.7)
P 		746.1
(0.1)
P 		617.6
(-1.5)
P 		612.2
(-1.5)
P 		499
avr 519.8
(-3) 		932.1
(3) 		871.4
(2.1) 		825.1
(1.4) 		712.7
(-0.2) 		596.1
(-1.9) 		412
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 466
1 2 3 4 range
A 115.5
(-1.7)
P 		237.9
(1.2)
P 		316.2
(3)
P 		60
(-3)
P 		256
B 101
(-1.9)
P 		309.5
(3)
P 		287.4
(2.5)
P 		55
(-3)
P 		255
C 94.6
(-2.3)
P 		371.8
(1.3)
P 		504
(3)
P 		38.1
(-3)
P 		466
avr 103.7
(-2) 		306.4
(1.8) 		369.2
(3) 		51
(-3) 		318

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 260
1 2 3 4 5 6 range
A 91.8
(-3)
P 		338.6
(3)
P 		224.1
(0.2)
P 		222.4
(0.2)
P 		197.7
(-0.4)
P 		134.7
(-2)
P 		247
B 198.4
(-2.1)
P 		284.2
(0.8)
P 		170.8
(-3)
P 		225.7
(-1.2)
P 		351.6
(3)
P 		232.2
(-1)
P 		181
C 182.1
(-1.7)
P 		302.2
(3)
P 		224.5
(-0.1)
P 		150
(-3)
P 		199.8
(-1)
P 		205
(-0.8)
P 		152
avr 157.4
(-3) 		308.3
(3) 		206.5
(-1) 		199.4
(-1.3) 		249.7
(0.7) 		190.6
(-1.7) 		151
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183827_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5693
Sequence Type Exemplar sequence
Representative Public ID K01A2.5 NCBI
Target Description K01A2.5 /REP_DB=WormBase Gene ID /WP=CE19513 /TR=Q9TZ58 /GB=AAC69505.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061300(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061300 NCBI Caenorhabditis elegans K01A2.5 (K01A2.5) mRNA, complete cds. 11/11 None
SNAP00000016832 ENSEMBL cdna:SNAP chromosome:CEL140:II:302414:303601:1 11/11 None
GENEFINDER00000016842 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:299582:303601:1 11/11 None
K01A2.5 ENSEMBL cdna:known chromosome:CEL140:II:302402:303604:1 gene:K01A2.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:302413-303601(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K01A2.5
Entrez Gene 173418 Entrez gene
SwissProt Q9TZ58 EMBL-EBI
WormBase CE19513 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1593991_AT similar to Valacyclovir hydrolase precursor (VACVase) (Biphenyl hydrolase-like protein) (Biphenyl hydrolase-related protein) (Bph-rp) (Breast epithelial mucin-associated antigen) (MCNAA) cfa
CANINE_2:CFAAFFX.14710.1.S1_AT similar to Valacyclovir hydrolase precursor (VACVase) (Biphenyl hydrolase-like protein) (Biphenyl hydrolase-related protein) (Bph-rp) (Breast epithelial mucin-associated antigen) (MCNAA) cfa
DROSOPHILA_2:1637336_AT dm
DROSGENOME1:150370_AT dm
CHICKEN:GGA.12024.1.S1_AT biphenyl hydrolase-like (serine hydrolase; breast epithelial mucin-associated antigen) gga
HG-U133_PLUS_2:205750_AT biphenyl hydrolase-like (serine hydrolase; breast epithelial mucin-associated antigen) hs
HG-U133A:205750_AT biphenyl hydrolase-like (serine hydrolase; breast epithelial mucin-associated antigen) hs
HG-FOCUS:205750_AT biphenyl hydrolase-like (serine hydrolase; breast epithelial mucin-associated antigen) hs
HG-U133A_2:205750_AT biphenyl hydrolase-like (serine hydrolase; breast epithelial mucin-associated antigen) hs
HU35KSUBD:RC_AA169798_AT biphenyl hydrolase-like (serine hydrolase; breast epithelial mucin-associated antigen) hs
HUGENEFL:X81372_AT biphenyl hydrolase-like (serine hydrolase; breast epithelial mucin-associated antigen) hs
U133_X3P:G4757861_3P_X_AT biphenyl hydrolase-like (serine hydrolase; breast epithelial mucin-associated antigen) hs
HG-U95AV2:40912_S_AT biphenyl hydrolase-like (serine hydrolase; breast epithelial mucin-associated antigen) hs
HG-U95AV2:40911_AT Biphenyl hydrolase-like (serine hydrolase; breast epithelial mucin-associated antigen) hs
HG-U95C:64956_AT Biphenyl hydrolase-like (serine hydrolase; breast epithelial mucin-associated antigen) hs
HU35KSUBA:RC_AA424806_AT Biphenyl hydrolase-like (serine hydrolase; breast epithelial mucin-associated antigen) hs
HU35KSUBB:RC_T57053_AT Biphenyl hydrolase-like (serine hydrolase; breast epithelial mucin-associated antigen) hs
MG-U74AV2:162248_F_AT biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) mm
MOUSE430A_2:1420235_AT biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) mm
MOE430A:1420235_AT biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) mm
MOUSE430_2:1420235_AT biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) mm
MG-U74AV2:96231_AT biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) mm
MG-U74AV2:161851_R_AT biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) mm
MG-U74AV2:161804_R_AT biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) mm
MG-U74AV2:161769_R_AT biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) mm
MG-U74CV2:170063_AT biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) mm
MOE430A:1424242_AT biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) mm
MOUSE430A_2:1424242_AT biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) mm
MOUSE430_2:1424242_AT biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) mm
MOE430B:1430531_AT biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) mm
MOUSE430_2:1430531_AT biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) mm
MU11KSUBA:AA107102_S_AT Biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) (Bphl), mRNA mm
MU19KSUBA:TC22680_AT Biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) (Bphl), mRNA mm
MU19KSUBC:TC35997_AT Biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) (Bphl), mRNA mm
RG-U34C:RC_AI235739_AT biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) (predicted) rn
RAE230A:1388617_AT biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) (predicted) rn
RAT230_2:1388617_AT biphenyl hydrolase-like (serine hydrolase, breast epithelial mucin-associated antigen) (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAC69505 Hypothetical protein K01A2.5 [Caenorhabditis elegans] ref|NP_493701.1| K01A2.5 [Caenorhabditis elegans] 1.0E-160
blast CAE62869 Hypothetical protein CBG07052 [Caenorhabditis briggsae] 1.0E-147
blast CAE62869 Hypothetical protein CBG07052 [Caenorhabditis briggsae] 1.0E-146
blast AAK26377 putative alpha/beta hydrolase [Heterodera glycines] 3.0E-82
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000016842 1 78-100
Sequence
Target Sequence 
>C. ELEGANS:183827_AT
tgatcctccaggttacggtacctcaagacctccagagcgaaaacaagaagttcagagatg
tatgaaggatagtgaatattgcctagggttaatggagaccctgaaactagagccgttcac
cgtgatggggtggtcagaaggtgctagaacaacggtccacgtggcagctaaaggaaagga
aaaagtgaatcgaatgattgtaatggctggtgcaacaaaagttaatcatctaggagccat
ggctttcaagggaatgcgtgaaacaaatcattggctagcagccggtcgtcaaccatattt
ggaccattattcgccggaaacactccggacacaatgggcggcactttgtgacgtcgtaga
tcaagttcactcgttctgcggtggccgtttcccgtgtgacctggtacttccacaagtcaa
atgcccgacactagtgatgaatggtggattggaccggttctgtggtgacccgaatgtatg
cttcatccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGATCCTCCAGGTTACGGTACCTCA 442 559 198 Antisense
GGAGACCCTGAAACTAGAGCCGTTC 187 509 291 Antisense
TAGAACAACGGTCCACGTGGCAGCT 229 647 342 Antisense
CAGCCGGTCGTCAACCATATTTGGA 683 201 476 Antisense
GGACCATTATTCGCCGGAAACACTC 87 461 498 Antisense
CACTCCGGACACAATGGGCGGCACT 223 167 518 Antisense
GCGGCACTTTGTGACGTCGTAGATC 229 285 535 Antisense
GTAGATCAAGTTCACTCGTTCTGCG 702 455 553 Antisense
GTGTGACCTGGTACTTCCACAAGTC 614 487 591 Antisense
GGATTGGACCGGTTCTGTGGTGACC 424 507 643 Antisense
TGACCCGAATGTATGCTTCATCCCA 245 571 663 Antisense
Sequence Source Affymetrix Proprietary Database