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[183826_at]

Description F01G10.9 /REP_DB=WormBase Gene ID /WP=CE09171 /TR=O17767 /GB=CAB02897.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 49      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 436
1 2 3 4 range
A 104.8
(-3)
A 		532.3
(3)
P 		496.6
(2.5)
P 		265.4
(-0.7)
A 		428
B 131
(-3)
A 		439.7
(2.5)
P 		467
(3)
P 		166.8
(-2.4)
A 		336
C 115.3
(-3)
A 		439.3
(1.6)
P 		540.8
(3)
P 		173.2
(-2.2)
A 		426
avr 117
(-3) 		470.4
(2.5) 		501.5
(3) 		201.8
(-1.7) 		385

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 251
1 2 3 4 5 6 range
A 345.8
(3)
P 		218.5
(-0.3)
P 		115
(-3)
M 		151
(-2.1)
P 		269.8
(1)
M 		131.5
(-2.6)
A 		231
B 276
(3)
P 		136.2
(-3)
P 		265.8
(2.6)
P 		218.9
(0.5)
P 		217.9
(0.5)
A 		140.9
(-2.8)
A 		140
C 289.3
(3)
P 		176
(-0.5)
P 		268.7
(2.4)
A 		283.2
(2.8)
P 		184.9
(-0.2)
P 		94.4
(-3)
A 		195
avr 303.7
(3) 		176.9
(-1.2) 		216.5
(0.1) 		217.7
(0.2) 		224.2
(0.4) 		122.3
(-3) 		181
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 38.2
(-3)
A 		115.6
(2.1)
P 		129.8
(3)
P 		38.8
(-3)
A 		92
B 41.8
(-2.5)
A 		108.6
(3)
P 		108.2
(3)
P 		35.6
(-3)
A 		73
C 38.2
(-2.7)
A 		126.3
(0.7)
P 		188.5
(3)
P 		29.2
(-3)
A 		159
avr 39.4
(-2.7) 		116.8
(1.6) 		142.2
(3) 		34.5
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 82
1 2 3 4 5 6 range
A 63.8
(1.1)
P 		77.7
(2.6)
P 		25
(-3)
M 		38.3
(-1.6)
P 		81.4
(3)
M 		32
(-2.3)
A 		56
B 96
(3)
P 		45.3
(-3)
P 		64.5
(-0.7)
P 		58
(-1.5)
P 		88.5
(2.1)
A 		52.5
(-2.1)
A 		51
C 107.2
(3)
P 		53.7
(-1.2)
P 		68.4
(-0.1)
A 		57
(-1)
P 		59.8
(-0.8)
P 		31.6
(-3)
A 		76
avr 89
(3) 		58.9
(-0.6) 		52.6
(-1.3) 		51.1
(-1.5) 		76.6
(1.5) 		38.7
(-3) 		50
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183826_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9513
Sequence Type Exemplar sequence
Representative Public ID F01G10.9 NCBI
Target Description F01G10.9 /REP_DB=WormBase Gene ID /WP=CE09171 /TR=O17767 /GB=CAB02897.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069480(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069480 NCBI Caenorhabditis elegans F01G10.9 (F01G10.9) mRNA, complete cds. 11/11 None
SNAP00000013164 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10256014:10259628:-1 11/11 None
GENEFINDER00000013170 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10256014:10259285:-1 11/11 None
F01G10.9 ENSEMBL cdna:known chromosome:CEL140:IV:10255523:10259628:-1 gene:F01G10.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10256256-10259616(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F01G10.9
Entrez Gene 177909 Entrez gene
SwissProt O17767 EMBL-EBI
WormBase CE35849 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02897 Hypothetical protein F01G10.9 [Caenorhabditis elegans] ref|NP_501881.2| F01G10.9 [Caenorhabditis elegans] 0.0
blast CAE60732 Hypothetical protein CBG04414 [Caenorhabditis briggsae] 1.0E-112
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000013170 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:183826_AT
gaatgcgtcgcagacgtccgatactcttttctgatgacttctcggatgaagctggtttcg
atcaacaaatcggaaactctgatcgtcatcaaacaacacgagatctttctccattaagat
caatgaaacgtcttcgccatcaaattccatataatcaaccataccgagtacctggaccaa
tgactcttccagtctcttcgacaactaatatgcttcatcgtccagttccattgcccggtg
ccccacaaccaatgagaatcccgcttcctccgggtgctccgatgccaatgccattggctc
caccaggaatggctttaccaccttcccaaccaatacaacctgttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATGCGTCGCAGACGTCCGATACT 323 331 605 Antisense
GATACTCTTTTCTGATGACTTCTCG 565 423 624 Antisense
GATCAATGAAACGTCTTCGCCATCA 598 421 722 Antisense
GTCTTCGCCATCAAATTCCATATAA 495 467 734 Antisense
ACCATACCGAGTACCTGGACCAATG 633 83 762 Antisense
TCTTCCAGTCTCTTCGACAACTAAT 652 617 789 Antisense
TAATATGCTTCATCGTCCAGTTCCA 273 635 810 Antisense
GCCCCACAACCAATGAGAATCCCGC 563 285 844 Antisense
CAATGCCATTGGCTCCACCAGGAAT 373 179 890 Antisense
CACCAGGAATGGCTTTACCACCTTC 137 185 905 Antisense
CTTCCCAACCAATACAACCTGTTCA 298 217 926 Antisense
Sequence Source Affymetrix Proprietary Database