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[183825_at]

Description Y39B6A.C /REP_DB=WormBase Gene ID /WP=CE24231 /TR=Q9NEI9 /GB=CAB61060.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 98      6grp_total > 96      4grp_total > 08      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 378
1 2 3 4 range
A 85.9
(-3)
A 		118.8
(-2.4)
A 		224.9
(-0.7)
P 		441.3
(3)
P 		355
B 92.6
(-3)
M 		90.9
(-3)
A 		125.8
(-2.3)
A 		404.7
(3)
P 		314
C 62.9
(-3)
M 		88.1
(-2.5)
A 		134
(-1.6)
P 		365.7
(3)
P 		303
avr 80.5
(-3) 		99.3
(-2.7) 		161.6
(-1.5) 		403.9
(3) 		323

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 702
1 2 3 4 5 6 range
A 138.9
(-2.9)
A 		132.6
(-3)
P 		254.7
(-1.6)
P 		348.9
(-0.5)
P 		642.3
(3)
P 		616.4
(2.7)
P 		510
B 126
(-3)
A 		149.1
(-2.8)
P 		223.6
(-2.2)
P 		401.1
(-0.6)
P 		587.7
(0.9)
P 		827.9
(3)
P 		702
C 138.8
(-3)
P 		165.1
(-2.8)
P 		248.8
(-2)
P 		436
(-0.3)
P 		642.5
(1.6)
P 		801.8
(3)
P 		663
avr 134.6
(-3) 		148.9
(-2.9) 		242.4
(-1.9) 		395.3
(-0.5) 		624.2
(1.8) 		748.7
(3) 		614
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 31.3
(-2.1)
A 		25.8
(-3)
A 		58.8
(2.1)
P 		64.6
(3)
P 		39
B 29.5
(-2.3)
M 		22.5
(-3)
A 		29.2
(-2.4)
A 		86.2
(3)
P 		64
C 20.8
(-3)
M 		25.3
(-2.3)
A 		46.7
(0.8)
P 		61.7
(3)
P 		41
avr 27.2
(-2.7) 		24.5
(-3) 		44.9
(-0.4) 		70.8
(3) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 283
1 2 3 4 5 6 range
A 25.6
(-3)
A 		47.2
(-2.2)
P 		55.5
(-1.9)
P 		88.5
(-0.8)
P 		193.8
(3)
P 		150.1
(1.4)
P 		168
B 43.8
(-3)
A 		49.6
(-2.9)
P 		54.3
(-2.8)
P 		106.2
(-1.6)
P 		238.8
(1.4)
P 		308.7
(3)
P 		265
C 51.4
(-3)
P 		50.4
(-3)
P 		63.3
(-2.6)
P 		87.7
(-2)
P 		207.9
(1.3)
P 		268.4
(3)
P 		218
avr 40.3
(-3) 		49.1
(-2.7) 		57.7
(-2.5) 		94.1
(-1.4) 		213.5
(2.1) 		242.4
(3) 		202
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183825_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19426
Sequence Type Exemplar sequence
Representative Public ID Y39B6A.C NCBI
Target Description Y39B6A.C /REP_DB=WormBase Gene ID /WP=CE24231 /TR=Q9NEI9 /GB=CAB61060.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075294
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000030689 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18970641:18973315:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075294 8/11 Cross Hyb Matching Probes None
Y39B6A.42 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18970640-18973315(-) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD31832 Hypothetical protein Y39B6A.42 [Caenorhabditis elegans] ref|NP_507695.2| Y39B6A.42 [Caenorhabditis elegans] 3.0E-43
blast CAE56191 Hypothetical protein CBG23814 [Caenorhabditis briggsae] 2.0E-9
Sequence
Target Sequence 
>C. ELEGANS:183825_AT
tgctggagaccgccggattggcagttgatgagattttcagtcgtttaagcggtgaaccaa
cactaacccgttcaaatacatcagttggatggctggattacgatgctcgcctgagaatcg
ctcgtaaaaaacgattttcacagcgaatactgaataaaagtcaaaaaatgggtcaatcca
cgtcaaaagtccccccatcatctccgccaaatgagccgaaattcgtgcagaacacaccaa
tctcgtcgccaggattcggacgtgcacagacgatgctcgacgtctcccaactggccgctg
ctgctgccacgttggatgctccgacacttcagagatcgtcttctgacaccgcgttgaaca
cgtcgatgacgacgacgacagtcacgcaaaccgcctgccaaaagtcgtaccaacaagctc
tggagtggggccgcaacgagcaattcctcaagtt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTGGAGACCGCCGGATTGGCAGT 89 583 14 Antisense
ATGGCTGGATTACGATGCTCGCCTG 590 53 102 Antisense
GCTCGCCTGAGAATCGCTCGTAAAA 233 299 118 Antisense
ATCATCTCCGCCAAATGAGCCGAAA 9 31 210 Antisense
TCTCGTCGCCAGGATTCGGACGTGC 370 611 254 Antisense
TCGGACGTGCACAGACGATGCTCGA 325 607 269 Antisense
GGATGCTCCGACACTTCAGAGATCG 695 513 327 Antisense
TCTGACACCGCGTTGAACACGTCGA 65 609 355 Antisense
GCAAACCGCCTGCCAAAAGTCGTAC 263 317 399 Antisense
CAACAAGCTCTGGAGTGGGGCCGCA 263 189 424 Antisense
GCCGCAACGAGCAATTCCTCAAGTT 436 285 443 Antisense
Sequence Source Affymetrix Proprietary Database