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[183823_s_at]

Description T08A11.1 /REP_DB=WormBase Gene ID /WP=CE16370 /TR=Q9XTE2 /GB=CAA15982.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 42      6grp_high1_10_10 > 24      4grp_high_8_8 > 09      6grp_highest_nonorm > 70      6grp_total > 12      4grp_total > 31      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 193
1 2 3 4 range
A 289.3
(3)
P 		135.2
(-3)
M 		191.8
(-0.8)
P 		196.6
(-0.6)
A 		154
B 250.5
(3)
P 		174.7
(-1.6)
P 		151.8
(-3)
P 		213.5
(0.8)
M 		99
C 328.5
(3)
P 		213.3
(-3)
P 		247.4
(-1.2)
P 		252.8
(-0.9)
P 		115
avr 289.4
(3) 		174.4
(-3) 		197
(-1.8) 		221
(-0.6) 		115

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 212
1 2 3 4 5 6 range
A 210.5
(-1.5)
P 		267.7
(3)
P 		243.6
(1.1)
P 		197.2
(-2.5)
P 		233.9
(0.3)
P 		191.2
(-3)
P 		77
B 365
(1.7)
P 		403.6
(3)
P 		339.9
(0.9)
P 		247.6
(-2.2)
P 		223.4
(-3)
P 		253.1
(-2)
P 		180
C 336.7
(1.8)
P 		371.7
(3)
P 		228.3
(-1.8)
P 		250.6
(-1.1)
P 		196.9
(-2.9)
P 		193.6
(-3)
P 		178
avr 304.1
(1.1) 		347.7
(3) 		270.6
(-0.4) 		231.8
(-2.1) 		218.1
(-2.8) 		212.6
(-3) 		135
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 105.3
(3)
P 		29.3
(-3)
M 		50.1
(-1.3)
P 		28.8
(-3)
A 		77
B 79.9
(3)
P 		43.1
(-1.9)
P 		35.2
(-3)
P 		45.5
(-1.6)
M 		45
C 108.8
(3)
P 		61.3
(-1.3)
P 		86.2
(1)
P 		42.6
(-3)
P 		66
avr 98
(3) 		44.6
(-2.4) 		57.2
(-1.1) 		39
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 96
1 2 3 4 5 6 range
A 38.8
(-3)
P 		95.2
(3)
P 		53
(-1.5)
P 		50
(-1.8)
P 		70.6
(0.4)
P 		46.5
(-2.2)
P 		56
B 127
(2.4)
P 		134.3
(3)
P 		82.5
(-1.5)
P 		65.6
(-3)
P 		90.8
(-0.8)
P 		94.4
(-0.5)
P 		69
C 124.8
(3)
P 		113.4
(2.1)
P 		58.1
(-2.4)
P 		50.4
(-3)
P 		63.7
(-1.9)
P 		64.8
(-1.8)
P 		74
avr 96.9
(1.2) 		114.3
(3) 		64.5
(-2.1) 		55.3
(-3) 		75
(-1) 		68.6
(-1.6) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183823_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6229
Sequence Type Exemplar sequence
Representative Public ID T08A11.1 NCBI
Target Description T08A11.1 /REP_DB=WormBase Gene ID /WP=CE16370 /TR=Q9XTE2 /GB=CAA15982.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065451(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065451 NCBI Caenorhabditis elegans T08A11.1 (T08A11.1) mRNA, complete cds. 11/11 None
T08A11.1 ENSEMBL cdna:known chromosome:CEL140:III:4248132:4263018:-1 gene:T08A11.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017410 5/11 Cross Hyb Matching Probes None
GENEFINDER00000017422 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4248639-4263018(-) 99.31 100.0
Public Domain and Genome References
Gene Title
Ensembl T08A11.1
Entrez Gene 175548 Entrez gene
SwissProt Q9XTE2 EMBL-EBI
WormBase CE16370 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
18346 protein amino acid prenylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8318 protein prenyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90776 Hypothetical protein T08A11.1 [Caenorhabditis elegans] emb|CAA15982.1| Hypothetical protein T08A11.1 [Caenorhabditis elegans] ref|NP_497852.1| T08A11.1 [Caenorhabditis elegans] 0.0
blast CAE73715 Hypothetical protein CBG21229 [Caenorhabditis briggsae] 0.0
blast CAE73716 Hypothetical protein CBG21230 [Caenorhabditis briggsae] 8.0E-87
Sequence
Target Sequence 
>C. ELEGANS:183823_S_AT
gatacagtactctcatggttcaacaaagcaagtaaacaaggaatgtcactatatccagta
ccagaagatccattcgctttggcacaagatactcattcaaatccacttcgatgtccaata
cgtattcaattgaaagagaaagtagttgcacattcggatgaacgagaatttcttcttaaa
attctattccgattcggatttattgatattggatgtaatgtgaagcatgatttctcatca
cctcgtactgattcatcatcatctgatcatacaaaagcactatcttctccatctccgaca
ttacaattggaaggagatgatggagatttggatgatgttacaatatctatgaattacatt
catcaggctggtggaatgttcatttcacttgttctttctgagaatccaaatcgtccaccg
ttcttctactgggcatggaatcatttgcttagtaatcgatatagaggtcaatgttctgag
aagttccaagattatctcttatcggaattccgagcagtgtgctccgacaaaaacgacaca
ctaactcaactttattcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACAGTACTCTCATGGTTCAACA 625 423 5014 Antisense
GAATGTCACTATATCCAGTACCAGA 667 331 5054 Antisense
CAGAAGATCCATTCGCTTTGGCACA 379 203 5075 Antisense
GATACTCATTCAAATCCACTTCGAT 573 423 5101 Antisense
CCACTTCGATGTCCAATACGTATTC 271 275 5116 Antisense
TGAAGCATGATTTCTCATCACCTCG 91 575 5234 Antisense
ACAAAAGCACTATCTTCTCCATCTC 697 111 5284 Antisense
TTCTCCATCTCCGACATTACAATTG 598 693 5298 Antisense
TCTGAGAATCCAAATCGTCCACCGT 376 607 5410 Antisense
GGAATTCCGAGCAGTGTGCTCCGAC 634 533 5517 Antisense
GACACACTAACTCAACTTTATTCGG 655 357 5548 Antisense
Sequence Source Affymetrix Proprietary Database