[Home] | [Total List]

[183822_s_at] Probable RNA binding protein /// ---

Description F10E7.2 /REP_DB=WormBase Gene ID /WP=CE04357 /TR=Q19307 /GB=AAA82429.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 79      4grp_highest_8_8 > 24      4grp_high_8_8 > 52      6grp_highest_nonorm > 73      6grp_total > 89      4grp_total > 52      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 346
1 2 3 4 range
A 617.1
(0.6)
P 		689
(3)
P 		567.2
(-1)
P 		508.1
(-3)
P 		181
B 626.1
(1.8)
P 		685.4
(3)
P 		673.2
(2.7)
P 		400.1
(-3)
P 		285
C 670.7
(1.5)
P 		746.4
(3)
P 		684.6
(1.8)
P 		433.4
(-3)
P 		313
avr 638
(1.4) 		706.9
(3) 		641.7
(1.5) 		447.2
(-3) 		260

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 342
1 2 3 4 5 6 range
A 501.9
(-0.2)
P 		517.1
(0.7)
P 		515.6
(0.7)
P 		459.3
(-3)
P 		486.8
(-1.2)
P 		551.8
(3)
P 		92
B 542
(-1.2)
P 		530.6
(-1.4)
P 		529
(-1.4)
P 		444.6
(-3)
P 		613.1
(0.2)
P 		760.9
(3)
P 		316
C 622.5
(1.7)
P 		480.5
(-1.6)
P 		419.2
(-3)
P 		456.8
(-2.1)
P 		680
(3)
P 		571.7
(0.5)
P 		261
avr 555.5
(0.5) 		509.4
(-1.1) 		487.9
(-1.8) 		453.6
(-3) 		593.3
(1.8) 		628.1
(3) 		175
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 166
1 2 3 4 range
A 224.7
(3)
P 		149.6
(0)
P 		148.3
(-0)
P 		74.4
(-3)
P 		150
B 199.7
(3)
P 		169.3
(1.4)
P 		156
(0.7)
P 		85.3
(-3)
P 		114
C 222
(2.4)
P 		214.6
(2.1)
P 		238.6
(3)
P 		73.1
(-3)
P 		166
avr 215.5
(3) 		177.8
(1.4) 		181
(1.5) 		77.6
(-3) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 92.5
(-3)
P 		183.9
(3)
P 		112.3
(-1.7)
P 		116.5
(-1.4)
P 		146.9
(0.6)
P 		134.3
(-0.3)
P 		91
B 188.6
(-0.4)
P 		176.6
(-0.9)
P 		128.4
(-2.6)
P 		117.8
(-3)
P 		249.1
(1.7)
P 		283.7
(3)
P 		166
C 230.7
(3)
P 		146.6
(-0.6)
P 		106.7
(-2.4)
P 		91.9
(-3)
P 		220
(2.5)
P 		191.4
(1.3)
P 		139
avr 170.6
(0.8) 		169
(0.7) 		115.8
(-2.6) 		108.7
(-3) 		205.3
(3) 		203.1
(2.9) 		97
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183822_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5951
Sequence Type Exemplar sequence
Representative Public ID F10E7.2 NCBI
Target Description F10E7.2 /REP_DB=WormBase Gene ID /WP=CE04357 /TR=Q19307 /GB=AAA82429.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063074(11), NM_063082(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063074 NCBI Caenorhabditis elegans F10E7.2 (F10E7.2) mRNA, complete cds. 11/11 A 
NM_063082 NCBI Caenorhabditis elegans C27H5.3 (C27H5.3) mRNA, complete cds. 11/11 A 
SNAP00000000733 ENSEMBL cdna:SNAP chromosome:CEL140:II:7122172:7124981:1 11/11 None
GENEFINDER00000000744 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7122172:7127719:1 11/11 None
SNAP00000006109 ENSEMBL cdna:SNAP chromosome:CEL140:II:7152747:7153462:1 11/11 None
GENEFINDER00000006122 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7152238:7155214:1 11/11 None
F10E7.2 ENSEMBL cdna:known chromosome:CEL140:II:7122172:7124316:1 gene:F10E7.2 11/11 A 
C27H5.3.1 ENSEMBL cdna:known chromosome:CEL140:II:7152497:7155405:1 gene:C27H5.3 11/11 A 
C27H5.3.2 ENSEMBL cdna:known chromosome:CEL140:II:7152560:7155655:1 gene:C27H5.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7122167-7124312(+) 93.95 100.0
Public Domain and Genome References
Gene Title Probable RNA binding protein

Ensembl F10E7.2
C27H5.3
Entrez Gene 174171 Entrez gene
174175 Entrez gene
SwissProt Q18265 EMBL-EBI
Q19307 EMBL-EBI
WormBase CE27099 Wormbase
CE35460 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1634362_A_AT cabeza dm
DROSGENOME1:142484_AT cabeza dm
HG-U133_PLUS_2:217370_X_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
HG-U133A_2:217370_X_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
HG-U133A:217370_X_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
HG-U133_PLUS_2:200959_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
HG-U133A:200959_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
HG-FOCUS:200959_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
HG-U133A_2:200959_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
HU35KSUBB:RC_AA025166_S_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
HU35KSUBB:RC_H93393_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
HU35KSUBD:RC_AA299629_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
HUGENEFL:X71428_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
U133_X3P:G4826733_3P_X_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
U133_X3P:G4826733_3P_S_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
U133_X3P:G4826733_3P_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
U133_X3P:HS2.392171.1.S1_3P_S_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
U133_X3P:HS2.392171.1.S1_3P_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
U133_X3P:HS.99969.3.S1_3P_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
U133_X3P:HS.99969.2.S1_3P_S_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
U133_X3P:HS.99969.2.S1_3P_A_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
U133_X3P:217370_3P_X_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
U133_X3P:200959_3P_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
HG-U133_PLUS_2:1565716_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
HG-U133_PLUS_2:1565717_S_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
HG-U133A_2:215744_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
HG-U133_PLUS_2:215744_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
HG-U133A:215744_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
HG-U95AV2:39180_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
HG-U95B:43501_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
HG-U95C:63941_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
HG-U95E:73061_AT fusion (involved in t(12;16) in malignant liposarcoma) hs
HG-U133_PLUS_2:1565715_AT Fusion (involved in t(12;16) in malignant liposarcoma) hs
HG-U133_PLUS_2:231108_AT Fusion (involved in t(12;16) in malignant liposarcoma) hs
HG-U133B:231108_AT Fusion (involved in t(12;16) in malignant liposarcoma) hs
HG-U95C:59931_AT Fusion (involved in t(12;16) in malignant liposarcoma) hs
HG-U95C:61744_R_AT Fusion (involved in t(12;16) in malignant liposarcoma) hs
HU35KSUBC:RC_AA004533_AT Fusion (involved in t(12;16) in malignant liposarcoma) hs
MOE430A:1455831_AT fusion, derived from t(12;16) malignant liposarcoma (human) mm
MOUSE430A_2:1455831_AT fusion, derived from t(12;16) malignant liposarcoma (human) mm
MOUSE430_2:1455831_AT fusion, derived from t(12;16) malignant liposarcoma (human) mm
MU11KSUBB:MSA.3356.0_S_AT fusion, derived from t(12;16) malignant liposarcoma (human) mm
MU11KSUBB:MSA.10497.0_S_AT fusion, derived from t(12;16) malignant liposarcoma (human) mm
MU11KSUBB:MSA.17592.0_S_AT fusion, derived from t(12;16) malignant liposarcoma (human) mm
MG-U74BV2:107506_AT fusion, derived from t(12;16) malignant liposarcoma (human) mm
MOE430A:1451286_S_AT fusion, derived from t(12;16) malignant liposarcoma (human) mm
MOUSE430A_2:1451286_S_AT fusion, derived from t(12;16) malignant liposarcoma (human) mm
MOUSE430_2:1451286_S_AT fusion, derived from t(12;16) malignant liposarcoma (human) mm
MOE430A:1451285_AT fusion, derived from t(12;16) malignant liposarcoma (human) mm
MOUSE430A_2:1451285_AT fusion, derived from t(12;16) malignant liposarcoma (human) mm
MOUSE430_2:1451285_AT fusion, derived from t(12;16) malignant liposarcoma (human) mm
MU19KSUBA:TC15766_AT Fusion, derived from t(12;16) malignant liposarcoma (human) (Fus), mRNA mm
MU19KSUBC:TC41666_AT Fusion, derived from t(12;16) malignant liposarcoma (human) (Fus), mRNA mm
RAE230A:1373195_AT fusion (involved in t(12;16) in malignant liposarcoma) (predicted) rn
RAT230_2:1373195_AT fusion (involved in t(12;16) in malignant liposarcoma) (predicted) rn
RAE230A:1375689_AT Fusion (involved in t(12;16) in malignant liposarcoma) (predicted) rn
RAT230_2:1375689_AT Fusion (involved in t(12;16) in malignant liposarcoma) (predicted) rn
RAE230B:1393068_AT Fusion (involved in t(12;16) in malignant liposarcoma) (predicted) rn
RAT230_2:1393068_AT Fusion (involved in t(12;16) in malignant liposarcoma) (predicted) rn
RG-U34C:RC_AI227987_AT Fusion (involved in t(12;16) in malignant liposarcoma) (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAA82431 Hypothetical protein F10E7.1 [Caenorhabditis elegans] ref|NP_495477.1| F10E7.1 [Caenorhabditis elegans] 1.0E-130
blast AAC46658 Hypothetical protein C27H5.4a [Caenorhabditis elegans] ref|NP_001021997.1| C27H5.4a [Caenorhabditis elegans] 3.0E-54
blast AAP86617 Hypothetical protein C27H5.4b [Caenorhabditis elegans] ref|NP_001021998.1| C27H5.4b [Caenorhabditis elegans] 3.0E-54
blast AAC46657 Hypothetical protein C27H5.3 [Caenorhabditis elegans] ref|NP_495483.1| C27H5.3 [Caenorhabditis elegans] 4.0E-54
blast AAC46657 Hypothetical protein C27H5.3 [Caenorhabditis elegans] ref|NP_495483.1| C27H5.3 [Caenorhabditis elegans] 4.0E-53
blast CAE67550 Hypothetical protein CBG13075 [Caenorhabditis briggsae] 3.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR009497 EMBL-EBI Protein of unknown function DUF1114 6.7E-122
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.3E-9
Pfam IPR001876 EMBL-EBI Zn-finger, Ran-binding 2.6E-7
Pfam IPR001876 EMBL-EBI Zn-finger, Ran-binding 2.6E-7
Pfam IPR000504 EMBL-EBI RNA-binding region RNP-1 (RNA recognition motif) 1.3E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495475.2 1 194-216
F10E7.2 1 194-216
SNAP00000000733 2 320-342,352-374
GENEFINDER00000000744 3 317-339,383-405,420-439
Sequence
Target Sequence 
>C. ELEGANS:183822_S_AT
gaccaaagtcaacccgactacagcacacccgaagggcagcaggcgtattgtgcctattat
caacaacaacaacaacaacaacaacaacaacaacaacaacaacaaggaggtcaacctgca
gaaaccgtacgccgctgctgcttatggaggccacgaccaagcacaacaaccgcaaaatcc
atatgcaccaccaccaccaggagcggatccatacggccaaggatccggaggccaatccgg
aggatctgacccctacggcacagtagaggtggcggccgtggaggattcggaggcagtcgt
ggaggaggtggatatgatggtggaagtgtcgaaagtcgtggaggatacgacggaggacgc
ggagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACCAAAGTCAACCCGACTACAGCA 130 385 162 Antisense
GACTACAGCACACCCGAAGGGCAGC 309 369 177 Antisense
CACCCGAAGGGCAGCAGGCGTATTG 21 187 187 Antisense
GACCAAGCACAACAACCGCAAAATC 305 385 316 Antisense
ACAACCGCAAAATCCATATGCACCA 478 113 327 Antisense
GAGCGGATCCATACGGCCAAGGATC 360 385 362 Antisense
GGCCAAGGATCCGGAGGCCAATCCG 24 537 376 Antisense
GAGGCCAATCCGGAGGATCTGACCC 488 405 389 Antisense
TAGAGGTGGCGGCCGTGGAGGATTC 335 651 425 Antisense
GGATTCGGAGGCAGTCGTGGAGGAG 523 507 444 Antisense
GAGGATACGACGGAGGACGCGGAGG 478 403 502 Antisense
Sequence Source Affymetrix Proprietary Database