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[183821_at]

Description F10E7.2 /REP_DB=WormBase Gene ID /WP=CE04357 /TR=Q19307 /GB=AAA82429.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 98      4grp_high_8_8 > 23      6grp_total > 96      4grp_total > 0      6grp_high1_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 216.4
(0.2)
P 		149.5
(-3)
A 		275.5
(3)
P 		272.8
(2.9)
P 		126
B 156.4
(-3)
P 		262.6
(2.2)
P 		279.8
(3)
P 		250.4
(1.6)
P 		123
C 279.1
(2)
P 		193.5
(-3)
P 		208.8
(-2.1)
P 		295.3
(3)
P 		102
avr 217.3
(-1.7) 		201.9
(-3) 		254.7
(1.5) 		272.8
(3) 		71

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 367
1 2 3 4 5 6 range
A 225.9
(-2.4)
A 		200.1
(-3)
P 		299.3
(-0.7)
P 		369.1
(0.8)
P 		365.1
(0.8)
P 		463.5
(3)
P 		263
B 182.2
(-1.2)
P 		96.1
(-3)
P 		252.3
(0.2)
P 		355.4
(2.3)
P 		318.5
(1.6)
P 		388.6
(3)
P 		293
C 298.1
(-0.2)
P 		169.7
(-3)
P 		178.1
(-2.8)
P 		221.4
(-1.9)
P 		442.6
(3)
P 		418.6
(2.5)
P 		273
avr 235.4
(-1.2) 		155.3
(-3) 		243.2
(-1) 		315.3
(0.6) 		375.4
(1.9) 		423.6
(3) 		268
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 78.8
(3)
P 		32.5
(-3)
A 		72
(2.1)
P 		39.9
(-2)
P 		46
B 49.9
(-3)
P 		64.8
(3)
P 		64.8
(3)
P 		53.4
(-1.6)
P 		15
C 92.4
(3)
P 		55.6
(-2.2)
P 		72.8
(0.2)
P 		49.8
(-3)
P 		43
avr 73.7
(3) 		51
(-2.2) 		69.9
(2.1) 		47.7
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 113
1 2 3 4 5 6 range
A 41.7
(-3)
A 		71.2
(-0.5)
P 		65.2
(-1)
P 		93.6
(1.4)
P 		110.2
(2.8)
P 		112.8
(3)
P 		71
B 63.4
(-1.3)
P 		32
(-3)
P 		61.3
(-1.4)
P 		94.1
(0.3)
P 		129.4
(2.2)
P 		144.9
(3)
P 		113
C 110.5
(1)
P 		51.8
(-2.6)
P 		45.3
(-3)
P 		44.5
(-3)
P 		143.2
(3)
P 		140.1
(2.8)
P 		99
avr 71.9
(-1.5) 		51.7
(-3) 		57.3
(-2.6) 		77.4
(-1.1) 		127.6
(2.6) 		132.6
(3) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183821_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5951
Sequence Type Exemplar sequence
Representative Public ID F10E7.2 NCBI
Target Description F10E7.2 /REP_DB=WormBase Gene ID /WP=CE04357 /TR=Q19307 /GB=AAA82429.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063074(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063074 NCBI Caenorhabditis elegans F10E7.2 (F10E7.2) mRNA, complete cds. 9/11 A 
F10E7.2 ENSEMBL cdna:known chromosome:CEL140:II:7122172:7124316:1 gene:F10E7.2 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_063040 2/11 Cross Hyb Matching Probes None
SNAP00000000733 6/11 Cross Hyb Matching Probes None
GENEFINDER00000000744 8/11 Cross Hyb Matching Probes None
ZK1127.6.1 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7122167-7124312(+) 93.95 100.0
Public Domain and Genome References
Gene Title
Ensembl F10E7.2
Entrez Gene 174171 Entrez gene
SwissProt Q19307 EMBL-EBI
WormBase CE35460 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA82429 Hypothetical protein F10E7.2 [Caenorhabditis elegans] ref|NP_495475.2| F10E7.2 [Caenorhabditis elegans] 5.0E-26
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_495475.2 1 194-216
F10E7.2 1 194-216
Sequence
Target Sequence 
>C. ELEGANS:183821_AT
gaatagacgagcggcttgcgaccaaagtcaacccgactacagcacacccgaagggcagca
ggcgtattgtgcctattatcaacaacaacaacaacaacaacaacaacaacaacaacaaca
acaaggaggtcaacctgcagaaaccgtacgccgctgctgcttatggaggccacgaccaag
cacaacaaccgcaaaatccatatgcaccaccaccaccaggagcggatccatacggccaag
gatccggaggccaatccggaggatctgacccctacggcacagtagaggtggcggccgtgg
aggattcggaggcagtcgtggaggaggtggatatgatggtggaagtgtcgaaagtcgtgg
aggatacgacggaggacgcggaggttacggcggtgaacgtggagagcgtggtgatcaagg
cgcaatataatttcaaatgttctcattcaatctcatcactttcccgttctccatctattt
tcgtacctgtatccacagtatttttaaccacttattgtttgtgtctcacattgattctaa
aaagaagtatacgcctaagcaaccacttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATAGACGAGCGGCTTGCGACCAA 341 325 143 Antisense
AGGTCAACCTGCAGAAACCGTACGC 489 53 269 Antisense
GACCCCTACGGCACAGTAGAGGTGG 92 287 409 Antisense
ATGGTGGAAGTGTCGAAAGTCGTGG 499 39 478 Antisense
AGGTTACGGCGGTGAACGTGGAGAG 324 1 524 Antisense
GAGAGCGTGGTGATCAAGGCGCAAT 368 395 544 Antisense
AAATGTTCTCATTCAATCTCATCAC 209 121 577 Antisense
CATCTATTTTCGTACCTGTATCCAC 479 211 614 Antisense
CTGTATCCACAGTATTTTTAACCAC 709 237 629 Antisense
AACCACTTATTGTTTGTGTCTCACA 24 149 648 Antisense
GTATACGCCTAAGCAACCACTTGAT 162 453 689 Antisense
Sequence Source Affymetrix Proprietary Database