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[183819_at]

Description C15H11.1 /REP_DB=WormBase Gene ID /WP=CE08178 /TR=Q9XVS6 /GB=CAB02735.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 11      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 216
1 2 3 4 range
A 89
(-2.5)
P 		113.9
(-1.7)
A 		70.5
(-3)
A 		278.3
(3)
M 		208
B 109.2
(-0.5)
P 		105.3
(-0.8)
A 		73.8
(-3)
A 		159.2
(3)
A 		85
C 96.1
(-0.7)
A 		90.2
(-1.1)
A 		62.4
(-3)
A 		149.6
(3)
P 		87
avr 98.1
(-1.6) 		103.1
(-1.4) 		68.9
(-3) 		195.7
(3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 165
1 2 3 4 5 6 range
A 101.6
(-1.3)
A 		85.2
(-2)
A 		63.2
(-3)
A 		63.5
(-3)
P 		157.3
(1.3)
P 		195.3
(3)
P 		132
B 69.8
(-3)
A 		85.7
(-2.2)
A 		73.9
(-2.8)
A 		88.6
(-2)
A 		118.2
(-0.5)
P 		186.4
(3)
P 		117
C 94.9
(-1.2)
A 		99.4
(-1)
A 		45
(-3)
A 		62.5
(-2.4)
A 		104.7
(-0.8)
P 		209.6
(3)
P 		165
avr 88.8
(-1.8) 		90.1
(-1.7) 		60.7
(-3) 		71.5
(-2.5) 		126.7
(-0.1) 		197.1
(3) 		136
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 32.4
(0.8)
P 		24.7
(-1.3)
A 		18.4
(-3)
A 		40.7
(3)
M 		22
B 34.8
(3)
P 		26
(0)
A 		17.1
(-3)
A 		33.9
(2.7)
A 		18
C 31.8
(3)
A 		25.9
(-0.5)
A 		21.8
(-3)
A 		25.2
(-1)
P 		10
avr 33
(2.9) 		25.5
(-0.3) 		19.1
(-3) 		33.3
(3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 18.7
(-2.1)
A 		30.3
(-0.1)
A 		13.8
(-3)
A 		16.1
(-2.6)
P 		47.5
(3)
P 		47.5
(3)
P 		34
B 24.3
(-2.3)
A 		28.5
(-1.8)
A 		17.9
(-3)
A 		23.5
(-2.3)
A 		48
(0.5)
P 		69.5
(3)
P 		52
C 35.2
(-0.6)
A 		30.3
(-1.1)
A 		11.4
(-3)
A 		12.6
(-2.9)
A 		33.9
(-0.7)
P 		70.2
(3)
P 		59
avr 26.1
(-1.5) 		29.7
(-1.1) 		14.4
(-3) 		17.4
(-2.6) 		43.1
(0.6) 		62.4
(3) 		48
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183819_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13097
Sequence Type Exemplar sequence
Representative Public ID C15H11.1 NCBI
Target Description C15H11.1 /REP_DB=WormBase Gene ID /WP=CE08178 /TR=Q9XVS6 /GB=CAB02735.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074164(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074164 NCBI Caenorhabditis elegans C15H11.1 (C15H11.1) mRNA, complete cds. 11/11 None
C15H11.1 ENSEMBL cdna:known chromosome:CEL140:V:14396446:14398337:1 gene:C15H11.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026571 5/11 Cross Hyb Matching Probes None
SNAP00000026572 5/11 Cross Hyb Matching Probes None
GENEFINDER00000026585 5/11 Cross Hyb Matching Probes None
GENEFINDER00000026592 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:14396445-14398337(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C15H11.1
Entrez Gene 182646 Entrez gene
SwissProt Q9XVS6 EMBL-EBI
WormBase CE08178 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB02735 Hypothetical protein C15H11.1 [Caenorhabditis elegans] ref|NP_506565.1| C15H11.1 [Caenorhabditis elegans] 1.0E-115
blast CAE71119 Hypothetical protein CBG17972 [Caenorhabditis briggsae] 9.0E-56
blast CAE17819 Hypothetical protein F52F12.8 [Caenorhabditis elegans] ref|NP_001021485.1| F52F12.8 [Caenorhabditis elegans] 9.0E-55
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 3.1E-18
Sequence
Target Sequence 
>C. ELEGANS:183819_AT
gataagattcaattcctttccgacccccgcgaggagcaaaaaacgattctgaaaatcacg
aatcaaagtgaaatgaagcaggcattcaaagtgaagtgtacacgaaatgatctattccgt
atcaagccatcaactggaatactcgactataatcagacgcttactgtgatcctagtttac
aggggagggcaagagactgttcctattgatagacaacattttggagtttatcatattccg
gcaccagagaattgtacttgtgagggagcttgggctgagcattatggaccgccacaagga
gaacacaaattgagagttacaccatccactgaagagcaaatggaatattcggcgcttcca
ccaactccaactgtcgcctcttcaattaaacaatcaacgaagcacaagaggactgagagg
cagctacaatcaactcagaagatgtccactgagaacatcacatccgtccaagcttccacc
acccaacaagagtgcccgacacaggaagatgacccgaccgctccaacaccagttgcaaaa
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAAGATTCAATTCCTTTCCGACC 209 423 52 Antisense
ATCTATTCCGTATCAAGCCATCAAC 487 31 161 Antisense
GACGCTTACTGTGATCCTAGTTTAC 226 381 207 Antisense
GGAGGGCAAGAGACTGTTCCTATTG 137 517 235 Antisense
CTGAGCATTATGGACCGCCACAAGG 182 239 326 Antisense
GAGTTACACCATCCACTGAAGAGCA 96 399 365 Antisense
AATGGAATATTCGGCGCTTCCACCA 141 163 390 Antisense
CAACTGTCGCCTCTTCAATTAAACA 664 185 419 Antisense
GTCCACTGAGAACATCACATCCGTC 287 477 495 Antisense
CGACACAGGAAGATGACCCGACCGC 525 249 548 Antisense
ACCGCTCCAACACCAGTTGCAAAAC 138 89 568 Antisense
Sequence Source Affymetrix Proprietary Database