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[183818_s_at]

Description C05E7.1B /REP_DB=WormBase Gene ID /WP=CE23522 /TR=Q9U3R5 /GB=CAB54185.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      4grp_highest_8_8 > 02      4grp_high_8_8 > 46      6grp_highest_nonorm > 63      6grp_total > 93      4grp_total > 49      6grp_highest_sub > 05      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 738
1 2 3 4 range
A 98.2
(-3)
P 		836.3
(3)
P 		737.3
(2.2)
P 		193.5
(-2.2)
P 		738
B 153.1
(-3)
P 		789.3
(2.6)
P 		834
(3)
P 		183.9
(-2.7)
P 		681
C 106.8
(-3)
P 		687.5
(2.6)
P 		732.9
(3)
P 		269.8
(-1.4)
P 		626
avr 119.4
(-3) 		771
(3) 		768.1
(3) 		215.7
(-2.1) 		652

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 952
1 2 3 4 5 6 range
A 194.1
(-3)
P 		477.4
(-1)
P 		419.5
(-1.4)
P 		822.5
(1.3)
P 		1064.1
(3)
P 		432.2
(-1.4)
P 		870
B 140.1
(-3)
P 		522.5
(-0.5)
P 		365.2
(-1.5)
P 		699.6
(0.7)
P 		1052.3
(3)
P 		429.7
(-1.1)
P 		912
C 129
(-3)
P 		458.7
(-0.9)
P 		377.2
(-1.4)
P 		749.4
(0.9)
P 		1081.3
(3)
P 		526.8
(-0.5)
P 		952
avr 154.4
(-3) 		486.2
(-0.8) 		387.3
(-1.5) 		757.2
(1) 		1065.9
(3) 		462.9
(-1) 		912
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 35.8
(-2.7)
P 		181.5
(2.6)
P 		192.8
(3)
P 		28.3
(-3)
P 		165
B 48.8
(-2.6)
P 		194.9
(3)
P 		193.3
(2.9)
P 		39.2
(-3)
P 		156
C 35.3
(-3)
P 		197.7
(1.4)
P 		255.4
(3)
P 		45.5
(-2.7)
P 		220
avr 40
(-2.9) 		191.4
(2.2) 		213.8
(3) 		37.7
(-3) 		176

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 392
1 2 3 4 5 6 range
A 35.8
(-3)
P 		169.8
(-0.2)
P 		91.4
(-1.8)
P 		208.6
(0.6)
P 		321.1
(3)
P 		105.2
(-1.5)
P 		285
B 48.7
(-3)
P 		173.9
(-1)
P 		88.7
(-2.4)
P 		185.3
(-0.8)
P 		427.5
(3)
P 		160.2
(-1.2)
P 		379
C 47.8
(-3)
P 		140
(-1.2)
P 		96
(-2)
P 		150.7
(-1)
P 		349.9
(3)
P 		176.3
(-0.4)
P 		302
avr 44.1
(-3) 		161.2
(-0.8) 		92
(-2.1) 		181.5
(-0.4) 		366.2
(3) 		147.2
(-1.1) 		322
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183818_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17912
Sequence Type Exemplar sequence
Representative Public ID C05E7.1B NCBI
Target Description C05E7.1B /REP_DB=WormBase Gene ID /WP=CE23522 /TR=Q9U3R5 /GB=CAB54185.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029190(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029190 NCBI Caenorhabditis elegans C05E7.1 (C05E7.1) mRNA, complete cds. 11/11 None
SNAP00000014412 ENSEMBL cdna:SNAP chromosome:CEL140:X:12941471:12943178:-1 11/11 None
GENEFINDER00000014420 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12941471:12943178:-1 11/11 None
C05E7.1 ENSEMBL cdna:known chromosome:CEL140:X:12941423:12943466:-1 gene:C05E7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12941470-12943466(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C05E7.1
Entrez Gene 181427 Entrez gene
SwissProt Q9U3R5 EMBL-EBI
WormBase CE23522 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54185 Hypothetical protein C05E7.1 [Caenorhabditis elegans] ref|NP_001024361.1| C05E7.1 [Caenorhabditis elegans] 1.0E-173
blast T18956 hypothetical protein C05E7.1a - Caenorhabditis elegans 1.0E-169
blast CAB54185 Hypothetical protein C05E7.1 [Caenorhabditis elegans] ref|NP_001024361.1| C05E7.1 [Caenorhabditis elegans] 1.0E-159
blast T18956 hypothetical protein C05E7.1a - Caenorhabditis elegans 1.0E-156
blast CAE70366 Hypothetical protein CBG16925 [Caenorhabditis briggsae] 1.0E-151
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024361.1 1 21-43
C05E7.1 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:183818_S_AT
gacgagttgttgatctacttgtccgtgtcgaccactggtgacactcaaagaccaccggaa
gtgtgcagggatgccaatccggacactggttgtggaggtgttggatcatgtctctactgc
cggccatgtgattctttggactctctcacgaaaattctcggagctcaacttgttgtgaac
ggcaaaccagcaggatgtgagccattaaaaaaaggagaatatgataatgttgaactccgt
ttctgccttccgaaattagctgcattgttggaatggcagggaatttcagaagacgcgtta
gatcacattttagctgctactactcaggaaggaaatggtccaccaaagcttagtctattt
gtgaccgtttatttgttcgacaaggatattaaacctcttctagtctctcaacgaaaacta
gaatctcgcatccgtgaacttcgcaaacttggcgctgatgagccagttgactctcaaact
tattggaatctgccattcaatcaaattatcaaaaagcagtcagttttcgttggatgtcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGAGTTGTTGATCTACTTGTCCG 501 379 316 Antisense
GTCCGTGTCGACCACTGGTGACACT 640 475 336 Antisense
GTGCAGGGATGCCAATCCGGACACT 23 479 378 Antisense
AGGTGTTGGATCATGTCTCTACTGC 88 59 411 Antisense
GCCGGCCATGTGATTCTTTGGACTC 266 283 434 Antisense
TTGGACTCTCTCACGAAAATTCTCG 636 705 451 Antisense
ATAATGTTGAACTCCGTTTCTGCCT 580 23 539 Antisense
AATGGTCCACCAAAGCTTAGTCTAT 11 163 649 Antisense
CTAGAATCTCGCATCCGTGAACTTC 80 225 733 Antisense
GTGAACTTCGCAAACTTGGCGCTGA 589 481 749 Antisense
GCAGTCAGTTTTCGTTGGATGTCAC 526 311 831 Antisense
Sequence Source Affymetrix Proprietary Database