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[183817_at]

Description K04G7.1 /REP_DB=WormBase Gene ID /WP=CE01358 /TR=Q21234 /GB=AAA62533.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 68      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 94      6grp_total > 69      4grp_total > 47      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 287
1 2 3 4 range
A 551.2
(3)
P 		326.4
(-3)
P 		439.5
(0)
P 		407.7
(-0.8)
P 		225
B 557.8
(3)
P 		387.7
(-1.5)
P 		366.2
(-2.1)
P 		332.5
(-3)
P 		225
C 613.5
(3)
P 		368.5
(-2.9)
P 		364
(-3)
P 		420
(-1.7)
P 		250
avr 574.2
(3) 		360.9
(-3) 		389.9
(-2.2) 		386.7
(-2.3) 		213

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 529
1 2 3 4 5 6 range
A 491.2
(-0.5)
P 		452.2
(-1.1)
P 		320.6
(-3)
P 		386
(-2.1)
P 		489.5
(-0.5)
P 		733.9
(3)
P 		413
B 544.2
(-0.1)
P 		447.7
(-1.4)
P 		473.8
(-1.1)
P 		335.3
(-3)
P 		489.3
(-0.8)
P 		764.5
(3)
P 		429
C 538.8
(-1.2)
P 		482.5
(-1.9)
P 		404.1
(-3)
P 		403.5
(-3)
P 		441.6
(-2.5)
P 		849.6
(3)
P 		446
avr 524.7
(-0.8) 		460.8
(-1.7) 		399.5
(-2.6) 		374.9
(-3) 		473.5
(-1.5) 		782.7
(3) 		408
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 143
1 2 3 4 range
A 200.7
(3)
P 		70.8
(-2.5)
P 		114.9
(-0.7)
P 		59.7
(-3)
P 		141
B 177.9
(3)
P 		95.7
(-1.6)
P 		84.9
(-2.2)
P 		70.9
(-3)
P 		107
C 203.1
(3)
P 		105.9
(-1.4)
P 		126.9
(-0.5)
P 		70.8
(-3)
P 		132
avr 193.9
(3) 		90.8
(-1.9) 		108.9
(-1) 		67.1
(-3) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 90.5
(-1.9)
P 		160.8
(2)
P 		69.8
(-3)
P 		97.9
(-1.5)
P 		147.7
(1.3)
P 		178.7
(3)
P 		109
B 189.4
(0.1)
P 		149
(-1.2)
P 		115.1
(-2.2)
P 		88.8
(-3)
P 		198.8
(0.4)
P 		285.1
(3)
P 		196
C 199.7
(0.5)
P 		147.2
(-1.1)
P 		102.8
(-2.4)
P 		81.2
(-3)
P 		142.9
(-1.2)
P 		284.4
(3)
P 		203
avr 159.9
(-0.4) 		152.3
(-0.6) 		95.9
(-2.8) 		89.3
(-3) 		163.1
(-0.2) 		249.4
(3) 		160
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183817_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6257
Sequence Type Exemplar sequence
Representative Public ID K04G7.1 NCBI
Target Description K04G7.1 /REP_DB=WormBase Gene ID /WP=CE01358 /TR=Q21234 /GB=AAA62533.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066166(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066166 NCBI Caenorhabditis elegans K04G7.1 (K04G7.1) mRNA, complete cds. 11/11 None
SNAP00000036057 ENSEMBL cdna:SNAP chromosome:CEL140:III:7162642:7164763:1 11/11 None
GENEFINDER00000036058 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7162642:7164763:1 11/11 None
K04G7.1 ENSEMBL cdna:known chromosome:CEL140:III:7162636:7164859:1 gene:K04G7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7162675-7164761(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K04G7.1
Entrez Gene 176004 Entrez gene
SwissProt Q21234 EMBL-EBI
WormBase CE01358 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA62533 Hypothetical protein K04G7.1 [Caenorhabditis elegans] ref|NP_498567.1| K04G7.1 [Caenorhabditis elegans] 0.0
blast CAE70147 Hypothetical protein CBG16609 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:183817_AT
acaattatcaccaactccaacgactacagctggacttttgaaaaagagaaggcgagagtt
gccaagtattcgaggaatggcaaatcgtttcagtctggcaatcggcgactcggatagaat
agataacaccgaagtaaatcgctcaaatccacatctgatcgagtaccctgatccttcgtc
tattcttcgtggtgataatgcaggattgcctcccgttattatggcgccatccaccaatga
tgaagtatgcaaactgcagatcgaggcactccaacgtcatattcatctacaaaaaatgca
agaaaaactactccatgaacagtatgaagcttccatgcgaattccaatcacccgatacat
cgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAATTATCACCAACTCCAACGACT 101 115 1191 Antisense
TCAGTCTGGCAATCGGCGACTCGGA 547 623 1280 Antisense
ATCGCTCAAATCCACATCTGATCGA 64 37 1328 Antisense
ATCTGATCGAGTACCCTGATCCTTC 89 35 1343 Antisense
CTTCGTCTATTCTTCGTGGTGATAA 699 219 1364 Antisense
TGATAATGCAGGATTGCCTCCCGTT 56 563 1383 Antisense
TATTATGGCGCCATCCACCAATGAT 284 663 1407 Antisense
GCAAACTGCAGATCGAGGCACTCCA 161 319 1439 Antisense
GCACTCCAACGTCATATTCATCTAC 314 315 1456 Antisense
GAAGCTTCCATGCGAATTCCAATCA 628 341 1516 Antisense
AATTCCAATCACCCGATACATCGAA 553 177 1530 Antisense
Sequence Source Affymetrix Proprietary Database