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[183816_at]

Description K09E2.2 /REP_DB=WormBase Gene ID /WP=CE02815 /TR=Q21393 /GB=AAC46573.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 45      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 103
1 2 3 4 range
A 45.2
(-3)
A 		91.2
(3)
A 		63.4
(-0.6)
A 		71.5
(0.4)
A 		46
B 68.4
(3)
A 		56.4
(0.8)
A 		38.5
(-2.4)
A 		35
(-3)
A 		33
C 137.5
(3)
A 		64.5
(-1.9)
A 		52.6
(-2.7)
A 		47.5
(-3)
A 		90
avr 83.7
(3) 		70.7
(0.6) 		51.5
(-3) 		51.3
(-3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 32.2
(-2.3)
A 		56.8
(-0.7)
A 		110.5
(3)
A 		41
(-1.7)
A 		97.3
(2.1)
A 		22.6
(-3)
A 		88
B 75.5
(0.8)
A 		93.3
(2.9)
A 		93.8
(3)
A 		50.1
(-2.3)
A 		60.5
(-1)
A 		43.9
(-3)
A 		50
C 77.3
(0.5)
A 		119.9
(3)
A 		16.8
(-3)
A 		66.8
(-0.1)
A 		57
(-0.7)
A 		19.3
(-2.9)
A 		103
avr 61.7
(0.2) 		90
(3) 		73.7
(1.4) 		52.6
(-0.7) 		71.6
(1.2) 		28.6
(-3) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 16.5
(0.9)
A 		19.8
(3)
A 		16.6
(0.9)
A 		10.5
(-3)
A 		9
B 21.8
(3)
A 		13.9
(-0.3)
A 		8.9
(-2.4)
A 		7.5
(-3)
A 		14
C 45.5
(3)
A 		18.5
(-1.3)
A 		18.3
(-1.4)
A 		8
(-3)
A 		38
avr 27.9
(3) 		17.4
(-0.3) 		14.6
(-1.2) 		8.7
(-3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 5.9
(-2.9)
A 		20.2
(0.7)
A 		24.1
(1.7)
A 		10.4
(-1.8)
A 		29.4
(3)
A 		5.5
(-3)
A 		24
B 26.3
(1.4)
A 		31.1
(3)
A 		22.8
(0.2)
A 		13.3
(-3)
A 		24.6
(0.8)
A 		16.4
(-2)
A 		18
C 28.6
(1.5)
A 		36.6
(3)
A 		4.3
(-3)
A 		13.4
(-1.3)
A 		18.5
(-0.4)
A 		6.5
(-2.6)
A 		32
avr 20.3
(0.3) 		29.3
(3) 		17.1
(-0.7) 		12.4
(-2.1) 		24.2
(1.5) 		9.5
(-3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183816_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17138
Sequence Type Exemplar sequence
Representative Public ID K09E2.2 NCBI
Target Description K09E2.2 /REP_DB=WormBase Gene ID /WP=CE02815 /TR=Q21393 /GB=AAC46573.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077067(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077067 NCBI Caenorhabditis elegans K09E2.2 (K09E2.2) mRNA, complete cds. 11/11 None
GENEFINDER00000011517 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8679089:8681526:1 11/11 None
SNAP00000011511 ENSEMBL cdna:SNAP chromosome:CEL140:X:8680059:8681526:1 9/11 None
K09E2.2 ENSEMBL cdna:known chromosome:CEL140:X:8672998:8681591:1 gene:K09E2.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8678907-8681525(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09E2.2
Entrez Gene 187216 Entrez gene
SwissProt Q21393 EMBL-EBI
WormBase CE37259 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46573 Hypothetical protein K09E2.2 [Caenorhabditis elegans] ref|NP_509468.2| K09E2.2 [Caenorhabditis elegans] 0.0
blast CAE69343 Hypothetical protein CBG15421 [Caenorhabditis briggsae] 0.0
blast AAC46573 Hypothetical protein K09E2.2 [Caenorhabditis elegans] ref|NP_509468.2| K09E2.2 [Caenorhabditis elegans] 1.0E-97
blast CAE69343 Hypothetical protein CBG15421 [Caenorhabditis briggsae] 4.0E-86
Sequence
Target Sequence 
>C. ELEGANS:183816_AT
tattgttaccacccgcttatcgaaaatgggatatgtttcactcttccaacacaacgactt
tcattatccttacaaatcgtggaagattcttttcgaacaagacaaaatttcattgagatt
gcacacgaatgttgttgaattagcatttgtcattgagggaaattacttctatttggacac
actgactggagatgaattcagcaagttgagaaacttgcatcagaaaaaaatgtcgttgtc
ggaactgattatgaaatttgaaaaacatggagtacatattgtccccaatgatgacataat
taacaagcatagagatacaaaaaaggatttggatcttgaaattttcacttaccgccttat
ttgcctcaaccaaataaactgcgaatcgtgtcgtatgaatagcacagtttccatggaaac
tgttgttctcactgtcaacggagccccgagaaatatcacaacgaaatctgctggaaaata
tgtcgtgaattttggagaagctgggaaaaaacaaagaatccatgagaattatgtaacacc
agcaacgctgtttcaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTGTTACCACCCGCTTATCGAAA 571 661 492 Antisense
ATGGGATATGTTTCACTCTTCCAAC 24 51 517 Antisense
CAACGACTTTCATTATCCTTACAAA 697 187 543 Antisense
TTCTATTTGGACACACTGACTGGAG 227 689 658 Antisense
CATGGAGTACATATTGTCCCCAATG 515 207 757 Antisense
TCTTGAAATTTTCACTTACCGCCTT 242 613 825 Antisense
CCGCCTTATTTGCCTCAACCAAATA 152 263 843 Antisense
TGGAAACTGTTGTTCTCACTGTCAA 396 547 905 Antisense
TCACTGTCAACGGAGCCCCGAGAAA 337 623 920 Antisense
GGAGCCCCGAGAAATATCACAACGA 96 521 931 Antisense
GTAACACCAGCAACGCTGTTTCAAT 1 463 1024 Antisense
Sequence Source Affymetrix Proprietary Database