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[183815_at]

Description F21E9.3 /REP_DB=WormBase Gene ID /WP=CE09527 /TR=O16586 /GB=AAC70876.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 76      6grp_high1_10_10 > 77      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 95      6grp_total > 67      4grp_total > 02      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2467
1 2 3 4 range
A 348.8
(-2.7)
P 		388.4
(-2.6)
P 		244.1
(-3)
P 		2362.3
(3)
P 		2118
B 388.1
(-3)
P 		368.8
(-3)
P 		405.2
(-2.9)
P 		2701.2
(3)
P 		2332
C 321.5
(-2.8)
P 		402.3
(-2.6)
P 		234.3
(-3)
P 		2565
(3)
P 		2331
avr 352.8
(-2.8) 		386.5
(-2.8) 		294.5
(-3) 		2542.8
(3) 		2248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1544
1 2 3 4 5 6 range
A 524.2
(-2.7)
P 		468.8
(-3)
P 		566
(-2.5)
P 		566.4
(-2.5)
P 		569.9
(-2.5)
P 		1753.1
(3)
P 		1284
B 462.1
(-3)
P 		542.4
(-2.6)
P 		565.8
(-2.5)
P 		611.5
(-2.3)
P 		659.1
(-2.1)
P 		1814.6
(3)
P 		1353
C 483.8
(-3)
P 		584.7
(-2.6)
P 		501.3
(-2.9)
P 		660.6
(-2.3)
P 		594.7
(-2.6)
P 		2006
(3)
P 		1522
avr 490
(-3) 		532
(-2.8) 		544.4
(-2.8) 		612.8
(-2.5) 		607.9
(-2.5) 		1857.9
(3) 		1368
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 512
1 2 3 4 range
A 127
(-1.7)
P 		84.3
(-2.6)
P 		63.8
(-3)
P 		345.8
(3)
P 		282
B 123.7
(-2.6)
P 		91.1
(-3)
P 		93.9
(-3)
P 		575.6
(3)
P 		485
C 106.4
(-2.6)
P 		115.7
(-2.4)
P 		81.7
(-3)
P 		432.5
(3)
P 		351
avr 119
(-2.4) 		97
(-2.7) 		79.8
(-3) 		451.3
(3) 		372

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 580
1 2 3 4 5 6 range
A 96.6
(-3)
P 		166.7
(-1.7)
P 		123.3
(-2.5)
P 		143.7
(-2.1)
P 		172
(-1.6)
P 		426.8
(3)
P 		330
B 160.8
(-2.7)
P 		180.5
(-2.5)
P 		137.4
(-3)
P 		162
(-2.7)
P 		267.8
(-1.5)
P 		676.7
(3)
P 		539
C 179.3
(-2.4)
P 		178.4
(-2.4)
P 		127.6
(-3)
P 		132.8
(-2.9)
P 		192.4
(-2.3)
P 		671.5
(3)
P 		544
avr 145.6
(-2.8) 		175.2
(-2.4) 		129.4
(-3) 		146.2
(-2.8) 		210.7
(-1.9) 		591.7
(3) 		462
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183815_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18318
Sequence Type Exemplar sequence
Representative Public ID F21E9.3 NCBI
Target Description F21E9.3 /REP_DB=WormBase Gene ID /WP=CE09527 /TR=O16586 /GB=AAC70876.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075844(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075844 NCBI Caenorhabditis elegans F21E9.3 (F21E9.3) mRNA, complete cds. 11/11 None
SNAP00000024976 ENSEMBL cdna:SNAP chromosome:CEL140:X:1335459:1336900:-1 11/11 None
GENEFINDER00000024985 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1335459:1336900:-1 11/11 None
F21E9.3 ENSEMBL cdna:known chromosome:CEL140:X:1335358:1336910:-1 gene:F21E9.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1335458-1336900(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F21E9.3
Entrez Gene 184782 Entrez gene
SwissProt O16586 EMBL-EBI
WormBase CE09527 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC70876 Hypothetical protein F21E9.3 [Caenorhabditis elegans] ref|NP_508245.1| F21E9.3 [Caenorhabditis elegans] 7.0E-66
blast CAE63573 Hypothetical protein CBG08061 [Caenorhabditis briggsae] 8.0E-46
blast AAN84848 Hypothetical protein C37C3.13 [Caenorhabditis elegans] ref|NP_872192.1| C37C3.13 [Caenorhabditis elegans] 8.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR001534 EMBL-EBI Transthyretin-like 2.3E-59
Sequence
Target Sequence 
>C. ELEGANS:183815_AT
gatcattaactatcaccatcttcctttccttttacacactgcaagttgctccgcgagccg
tcgaaatatccgatgagcttccgattcaagcaatttccgcgtcagggcggttattttgtg
gggacaagccgctcattgggattccagtgaaattaattgacaaagatcatggtgacgaca
gagacgatctgctagatgaaaagaaaaccgacgaagagggaaaattccacgttactggag
gaacttatgagaaagctgtaattgagccagccctgaaaatttatcatgattgcaatgatg
gtaatcataaatgccaaaaacgattattctgggacattcctcaaaagtacgtgagcactg
acttgtacaaaatcccagttttcgacctgggatctatcaacttgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCATTAACTATCACCATCTTCCT 143 421 17 Antisense
TCCTTTCCTTTTACACACTGCAAGT 45 593 38 Antisense
TCCGCGAGCCGTCGAAATATCCGAT 54 597 66 Antisense
ATATCCGATGAGCTTCCGATTCAAG 277 17 82 Antisense
GATTCAAGCAATTTCCGCGTCAGGG 242 429 99 Antisense
GCGTCAGGGCGGTTATTTTGTGGGG 496 289 115 Antisense
GGACAAGCCGCTCATTGGGATTCCA 687 525 138 Antisense
GAGCCAGCCCTGAAAATTTATCATG 386 383 280 Antisense
AACGATTATTCTGGGACATTCCTCA 506 143 335 Antisense
GTACAAAATCCCAGTTTTCGACCTG 93 285 381 Antisense
TTCGACCTGGGATCTATCAACTTGG 6 689 397 Antisense
Sequence Source Affymetrix Proprietary Database