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[183814_at]

Description C24H11.4 /REP_DB=WormBase Gene ID /WP=CE18527 /TR=Q9XVD3 /GB=CAB03911.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 20      6grp_cgc > 33      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 77.5
(-1)
A 		88.7
(-0.3)
A 		44.4
(-3)
A 		143.5
(3)
A 		99
B 69.1
(3)
A 		43.7
(-3)
A 		52
(-1)
A 		49.4
(-1.7)
A 		25
C 44.6
(-1.4)
A 		59.9
(2.4)
A 		38.5
(-3)
A 		62.1
(3)
A 		24
avr 63.7
(-0.2) 		64.1
(-0.1) 		45
(-3) 		85
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 57.1
(0.7)
A 		62.2
(1.3)
A 		58.9
(0.9)
A 		29.2
(-3)
A 		60.5
(1.1)
A 		75
(3)
A 		46
B 122.6
(3)
A 		107.1
(1.8)
A 		50.4
(-2.7)
A 		81.9
(-0.2)
A 		69.8
(-1.1)
A 		46.1
(-3)
A 		77
C 57.1
(0.1)
A 		92
(3)
A 		91
(2.9)
A 		63.4
(0.6)
A 		21
(-3)
A 		45.6
(-0.9)
A 		71
avr 78.9
(1.7) 		87.1
(3) 		66.8
(-0.3) 		58.2
(-1.7) 		50.4
(-3) 		55.6
(-2.1) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 28.2
(3)
A 		19.3
(-0.2)
A 		11.6
(-3)
A 		21
(0.4)
A 		17
B 22
(3)
A 		10.8
(-2.8)
A 		12
(-2.2)
A 		10.5
(-3)
A 		12
C 14.8
(0.9)
A 		17.2
(3)
A 		13.4
(-0.4)
A 		10.5
(-3)
A 		7
avr 21.7
(3) 		15.8
(-0.8) 		12.3
(-3) 		14
(-1.9) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 10.5
(-1.7)
A 		22.1
(3)
A 		12.8
(-0.8)
A 		7.4
(-3)
A 		18.3
(1.4)
A 		18.3
(1.4)
A 		15
B 42.7
(3)
A 		35.6
(1.6)
A 		12.2
(-3)
A 		21.7
(-1.1)
A 		28.4
(0.2)
A 		17.2
(-2)
A 		31
C 21.2
(1.1)
A 		28.1
(3)
A 		23.2
(1.6)
A 		12.7
(-1.3)
A 		6.8
(-3)
A 		15.3
(-0.6)
A 		21
avr 24.8
(1.4) 		28.6
(3) 		16.1
(-2.1) 		13.9
(-3) 		17.8
(-1.4) 		16.9
(-1.8) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183814_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6967
Sequence Type Exemplar sequence
Representative Public ID C24H11.4 NCBI
Target Description C24H11.4 /REP_DB=WormBase Gene ID /WP=CE18527 /TR=Q9XVD3 /GB=CAB03911.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067124(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067124 NCBI Caenorhabditis elegans Serpentine Receptor, class D (delta) family member (srd-74) (srd-74) mRNA, complete cds. 11/11 None
GENEFINDER00000008952 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11781988:11783968:1 11/11 None
SNAP00000008944 ENSEMBL cdna:SNAP chromosome:CEL140:III:11782829:11786689:1 11/11 None
C24H11.4 ENSEMBL cdna:known chromosome:CEL140:III:11781988:11783950:1 gene:C24H11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11781983-11783946(+) 97.63 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srd-74
Ensembl C24H11.4
Entrez Gene 182862 Entrez gene
SwissProt Q9XVD3 EMBL-EBI
WormBase CE18527 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03911 Hypothetical protein C24H11.4 [Caenorhabditis elegans] ref|NP_499525.1| Serpentine Receptor, class D (delta) family member (srd-74) [Caenorhabditis elegans] 0.0
blast CAE67658 Hypothetical protein CBG13221 [Caenorhabditis briggsae] 1.0E-115
blast CAB03911 Hypothetical protein C24H11.4 [Caenorhabditis elegans] ref|NP_499525.1| Serpentine Receptor, class D (delta) family member (srd-74) [Caenorhabditis elegans] 1.0E-112
blast CAE67658 Hypothetical protein CBG13221 [Caenorhabditis briggsae] 6.0E-90
blast AAD14706 Serpentine receptor, class d (delta) protein 71 [Caenorhabditis elegans] ref|NP_503692.1| Serpentine Receptor, class D (delta) family member (srd-72) [Caenorhabditis elegans] ref|NP_503665.2| Serpentine Receptor, class D (delta) family member (srd-71) [Caenorhabditis elegans] gb|AAF60584.1| Hypothetical protein Y45G12C.9 [Caenorhabditis elegans] 2.0E-29
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499525.1 7 11-33,46-68,88-110,127-149,187-209,235-257,272-294
C24H11.4 7 11-33,46-68,88-110,127-149,187-209,235-257,272-294
GENEFINDER00000008952 7 11-33,46-68,88-110,127-149,187-209,235-257,272-294
SNAP00000008944 4 21-43,76-98,124-146,161-183
Sequence
Target Sequence 
>C. ELEGANS:183814_AT
gcaattttaattcctccatacgacttccctacagtaaccctgaacacggaaagatcgtat
cccaactatcacctattagatactttcggcgaatatggaggcttcaagtcgacaactcgg
ctggtttatcttatcaataccacaattctcatgggaattccctacatgatgcccgttttc
attctgtactggagacatcagatcttcaatcaaatcaacgaagttcagacacatttgagt
gaacgaaccaagaaatcgtcgttggatttggtgagggcactcacaatgcaggcaatgttc
ccgatggtatgccttcttcccaatgttgcatacttccttgtggcgcagcgaatccacatc
gagttcgagattgccgagttcgtgccgtttccaacctgcgtcatcccgtgcctcatcgat
ccgattctaacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATTTTAATTCCTCCATACGACT 393 323 448 Antisense
AAAGATCGTATCCCAACTATCACCT 267 123 497 Antisense
GGAGGCTTCAAGTCGACAACTCGGC 481 515 544 Antisense
GACAACTCGGCTGGTTTATCTTATC 63 365 558 Antisense
TGGGAATTCCCTACATGATGCCCGT 177 555 599 Antisense
GCCCGTTTTCATTCTGTACTGGAGA 261 285 618 Antisense
ATGCAGGCAATGTTCCCGATGGTAT 660 43 733 Antisense
ATGCCTTCTTCCCAATGTTGCATAC 531 41 756 Antisense
ACTTCCTTGTGGCGCAGCGAATCCA 316 103 779 Antisense
AGTTCGAGATTGCCGAGTTCGTGCC 80 65 809 Antisense
TGCCTCATCGATCCGATTCTAACGA 30 587 856 Antisense
Sequence Source Affymetrix Proprietary Database