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[183813_at]

Description C01G10.2 /REP_DB=WormBase Gene ID /WP=CE07811 /TR=Q93162 /GB=CAB02704.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 06      6grp_cgc > 84      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 69
1 2 3 4 range
A 32.7
(-1.6)
A 		21.3
(-3)
A 		30
(-1.9)
A 		70.3
(3)
P 		49
B 17.5
(3)
A 		14.6
(1.9)
A 		15.3
(2.2)
A 		1.5
(-3)
A 		16
C 36
(0)
P 		23.5
(-3)
A 		36.8
(0.2)
A 		48.4
(3)
P 		25
avr 28.7
(-0.4) 		19.8
(-3) 		27.4
(-0.8) 		40.1
(3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 1.2
(-3)
A 		32.8
(1.9)
P 		39
(2.8)
A 		40.2
(3)
A 		39.1
(2.8)
A 		18.8
(-0.3)
A 		39
B 18.5
(-1.6)
A 		17.8
(-1.7)
A 		38.4
(2.2)
A 		42.6
(3)
A 		20.3
(-1.3)
A 		11.2
(-3)
A 		31
C 23.4
(0.4)
A 		38
(3)
P 		4.5
(-3)
A 		29.8
(1.5)
P 		16.1
(-0.9)
A 		9.3
(-2.1)
A 		34
avr 14.4
(-2.7) 		29.5
(1) 		27.3
(0.5) 		37.5
(3) 		25.2
(-0) 		13.1
(-3) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 11.9
(3)
A 		4.6
(-3)
A 		7.8
(-0.4)
A 		10.3
(1.7)
P 		7
B 5.6
(3)
A 		3.6
(0.7)
A 		3.5
(0.6)
A 		0.3
(-3)
A 		5
C 11.9
(2.1)
P 		6.8
(-3)
A 		12.8
(3)
A 		8.2
(-1.6)
P 		6
avr 9.8
(3) 		5
(-3) 		8
(0.7) 		6.3
(-1.4) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.2
(-3)
A 		11.7
(2.9)
P 		8.5
(1.3)
A 		10.2
(2.2)
A 		11.8
(3)
A 		4.6
(-0.7)
A 		12
B 6.4
(-1.1)
A 		5.9
(-1.6)
A 		9.3
(1.3)
A 		11.3
(3)
A 		8.3
(0.5)
A 		4.2
(-3)
A 		7
C 8.7
(1.3)
A 		11.6
(3)
P 		1.2
(-3)
A 		6
(-0.2)
P 		5.2
(-0.7)
A 		3.1
(-1.9)
A 		10
avr 5.1
(-1.8) 		9.7
(3) 		6.3
(-0.6) 		9.2
(2.5) 		8.4
(1.6) 		4
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183813_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13788
Sequence Type Exemplar sequence
Representative Public ID C01G10.2 NCBI
Target Description C01G10.2 /REP_DB=WormBase Gene ID /WP=CE07811 /TR=Q93162 /GB=CAB02704.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074320(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074320 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-79) (srx-79) mRNA, complete cds. 11/11 None
GENEFINDER00000004638 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15100260:15106975:1 9/11 None
C01G10.2 ENSEMBL cdna:known chromosome:CEL140:V:15100260:15102140:1 gene:C01G10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15100259-15102140(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srx-79
Ensembl C01G10.2
Entrez Gene 182079 Entrez gene
SwissProt Q93162 EMBL-EBI
WormBase CE07811 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02704 Hypothetical protein C01G10.2 [Caenorhabditis elegans] ref|NP_506721.1| Serpentine Receptor, class X family member (srx-79) [Caenorhabditis elegans] 0.0
blast CAB02703 Hypothetical protein C01G10.1 [Caenorhabditis elegans] ref|NP_506722.1| C01G10.1 [Caenorhabditis elegans] 0.0
blast CAB04180 Hypothetical protein F26D2.10 [Caenorhabditis elegans] ref|NP_507152.1| F26D2.10 [Caenorhabditis elegans] 0.0
blast CAB04319 Hypothetical protein F36D3.5 [Caenorhabditis elegans] ref|NP_507181.1| F36D3.5 [Caenorhabditis elegans] 0.0
blast CAB02705 Hypothetical protein C01G10.3 [Caenorhabditis elegans] ref|NP_506720.2| Serpentine Receptor, class X family member (srx-78) [Caenorhabditis elegans] 2.0E-91
blast CAE64164 Hypothetical protein CBG08785 [Caenorhabditis briggsae] 1.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.4E-102
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 4.7E-29
Pfam IPR001357 EMBL-EBI BRCT 1.5E-17
Pfam IPR002110 EMBL-EBI Ankyrin 5.1E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506721.1 5 20-41,62-84,94-116,128-150,185-207
C01G10.2 5 20-41,62-84,94-116,128-150,185-207
GENEFINDER00000004638 7 20-41,62-84,94-116,128-150,185-207,353-375,1173-1195
Sequence
Target Sequence 
>C. ELEGANS:183813_AT
aacgcagtcacatacattctgtttcattatatgaagaaaaagacaatccgcggatctcaa
caccggagaaaagcacggaaaaatgtgttacagtttcttcagactcgtttgttttcttca
agactcgttgttttcaatcacggtcttgttttctcagctcgagtaagtcactggaacaat
ttcagcttcaactcaaaatataacttcaattccagtaacctttttgatcatagaatctgg
acattcttctgccaaacatttgtgttgcaattcgttcatgttcttgatgggcgtcaagca
aaaagtcaagctttcaagcgtttacattacctgcgagccgtgggttttcaaattttcgta
cacattcactgtatttttttaaatcaacatatggaaaatgttgacgcggctggcatttta
tgggtctgttccaaaaaattttcacatgtagctgaaattcgagttagtaatgaatatgaa
tttagattcattatgatgatgttcaacaatcgactgtccccaatgaaaaataaagttctc
cggaaagtgagcccattggagtctattgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGCAGTCACATACATTCTGTTTC 586 145 610 Antisense
CAATCCGCGGATCTCAACACCGGAG 106 181 653 Antisense
GTTACAGTTTCTTCAGACTCGTTTG 522 445 696 Antisense
GACTCGTTTGTTTTCTTCAAGACTC 164 375 711 Antisense
TCAATCACGGTCTTGTTTTCTCAGC 630 633 743 Antisense
TGTGTTGCAATTCGTTCATGTTCTT 695 555 870 Antisense
TCAAGCGTTTACATTACCTGCGAGC 361 631 923 Antisense
TTACCTGCGAGCCGTGGGTTTTCAA 106 683 936 Antisense
GACGCGGCTGGCATTTTATGGGTCT 416 381 1012 Antisense
TTCAACAATCGACTGTCCCCAATGA 633 685 1111 Antisense
GTGAGCCCATTGGAGTCTATTGCTG 302 483 1156 Antisense
Sequence Source Affymetrix Proprietary Database