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[183812_at]

Description C15C7.2 /REP_DB=WormBase Gene ID /WP=CE03988 /TR=Q18013 /GB=AAK39170.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 23      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 71      6grp_total > 30      4grp_total > 07      6grp_highest_sub > 04      6grp_cgc > 72      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 156
1 2 3 4 range
A 270.2
(-0.2)
P 		248.2
(-3)
P 		296.1
(3)
P 		266
(-0.8)
P 		48
B 258.6
(-1.4)
P 		251.8
(-1.9)
P 		235.5
(-3)
P 		320.9
(3)
P 		85
C 391.1
(3)
P 		248.1
(-3)
P 		290.9
(-1.2)
P 		297.8
(-0.9)
P 		143
avr 306.6
(3) 		249.4
(-3) 		274.2
(-0.4) 		294.9
(1.8) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 144
1 2 3 4 5 6 range
A 336.1
(1.2)
P 		378.9
(3)
P 		282.7
(-1)
P 		311.8
(0.2)
P 		271.8
(-1.5)
P 		234.9
(-3)
P 		144
B 272.1
(-1.6)
P 		311.1
(1.4)
P 		331.2
(3)
P 		299.9
(0.6)
P 		253.5
(-3)
P 		260.3
(-2.5)
P 		78
C 273.8
(-2.9)
P 		320.8
(-0.2)
P 		322.2
(-0.1)
P 		377.5
(3)
P 		272.1
(-3)
P 		275.2
(-2.8)
P 		105
avr 294
(-0.2) 		336.9
(3) 		312
(1.1) 		329.7
(2.5) 		265.8
(-2.3) 		256.8
(-3) 		80
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 91
1 2 3 4 range
A 98.4
(3)
P 		53.9
(-1.5)
P 		77.4
(0.9)
P 		38.9
(-3)
P 		60
B 82.5
(3)
P 		62.2
(-1.4)
P 		54.6
(-3)
P 		68.4
(-0)
P 		28
C 129.5
(3)
P 		71.3
(-1.4)
P 		101.4
(0.9)
P 		50.2
(-3)
P 		79
avr 103.5
(3) 		62.5
(-1.8) 		77.8
(-0) 		52.5
(-3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 62
(-2.6)
P 		134.7
(3)
P 		61.6
(-2.7)
P 		79.1
(-1.3)
P 		82
(-1.1)
P 		57.2
(-3)
P 		78
B 94.7
(0.8)
P 		103.6
(3)
P 		80.4
(-2.8)
P 		79.4
(-3)
P 		103
(2.9)
P 		97.1
(1.4)
P 		24
C 101.5
(3)
P 		97.9
(2.2)
P 		82
(-1.6)
P 		75.9
(-3)
P 		88
(-0.2)
P 		92.1
(0.8)
P 		26
avr 86.1
(-1.2) 		112.1
(3) 		74.7
(-3) 		78.1
(-2.5) 		91
(-0.4) 		82.1
(-1.8) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183812_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18526
Sequence Type Exemplar sequence
Representative Public ID C15C7.2 NCBI
Target Description C15C7.2 /REP_DB=WormBase Gene ID /WP=CE03988 /TR=Q18013 /GB=AAK39170.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076142(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076142 NCBI Caenorhabditis elegans Kinesin-Like Protein family member (klp-8) (klp-8) mRNA, complete cds. 11/11 None
C15C7.2 ENSEMBL cdna:known chromosome:CEL140:X:3159466:3164400:1 gene:C15C7.2 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000025253 5/11 Cross Hyb Matching Probes None
SNAP00000025245 5/11 Cross Hyb Matching Probes None
GENEFINDER00000025252 6/11 Cross Hyb Matching Probes None
SNAP00000025246 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3159465-3164148(+) 97.92 100.0
Public Domain and Genome References
Gene Title
Gene Symbol klp-8
Ensembl C15C7.2
Entrez Gene 180606 Entrez gene
SwissProt Q18013 EMBL-EBI
WormBase CE38486 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK39170 Kinesin-like protein protein 8 [Caenorhabditis elegans] ref|NP_508543.2| Kinesin-Like Protein family member (klp-8) [Caenorhabditis elegans] 0.0
blast T15510 hypothetical protein C15C7.2 - Caenorhabditis elegans 0.0
blast CAE68387 Hypothetical protein CBG14146 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000237 EMBL-EBI GRIP domain 2.7E-26
Pfam IPR000237 EMBL-EBI GRIP domain 2.7E-26
Sequence
Target Sequence 
>C. ELEGANS:183812_AT
tcagcggcggtgtgcccaagaagaaatcgagtcgagagatcaagaaattgaagcattccg
aaaaatgctggtcacattgcgacacgagaagatggaacgatcacaaaacccaagaaaaat
ctcgaggcacaatcgatcatcagcacacgacgaggagtctgctcgtaggaggagtagaac
attttcacaagatgacactgcagtgccaaatgatccggattctaaaaatgtttattatga
gaatcagctgtcgaagaaggattatgatattcaagagcttagacggcaacttatggatgt
tgagatacgtctccgagaaaacgagtctgtatcaatgtcccgccaacttgaatcagttgc
tcacaatgaagaaatgacggagaaggttcgagtgttagaaggaaaacttcaaatgttatc
gtcgacaagcgaaatcgactacctccgcaatattttcacccaattcctgcattcgatggg
atcgccgaatgccgccagcaaggccatcttgaaagcaatgggcagcgtgcttaaagttcc
catg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGCGGCGGTGTGCCCAAGAAGAA 606 607 1311 Antisense
ATGCTGGTCACATTGCGACACGAGA 69 43 1375 Antisense
GAGGCACAATCGATCATCAGCACAC 509 405 1434 Antisense
TCAGCACACGACGAGGAGTCTGCTC 662 621 1450 Antisense
GCAGTGCCAAATGATCCGGATTCTA 261 309 1510 Antisense
AAACGAGTCTGTATCAATGTCCCGC 132 127 1629 Antisense
AATGTCCCGCCAACTTGAATCAGTT 568 163 1644 Antisense
GACAAGCGAAATCGACTACCTCCGC 409 365 1734 Antisense
AATTCCTGCATTCGATGGGATCGCC 708 177 1772 Antisense
CCGCCAGCAAGGCCATCTTGAAAGC 41 263 1802 Antisense
GGGCAGCGTGCTTAAAGTTCCCATG 540 493 1830 Antisense
Sequence Source Affymetrix Proprietary Database