[Home] | [Total List]

[183811_at]

Description K09H9.2 /REP_DB=WormBase Gene ID /WP=CE18037 /TR=O44992 /GB=AAB97569.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 17      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 240
1 2 3 4 range
A 147
(-3)
A 		166.4
(-2.5)
A 		207.3
(-1.5)
A 		386.5
(3)
P 		240
B 154.2
(-3)
A 		179.6
(-1.9)
A 		181.4
(-1.8)
A 		293.3
(3)
P 		139
C 156.9
(-3)
A 		245.3
(3)
P 		203.7
(0.2)
M 		211.5
(0.7)
P 		88
avr 152.7
(-3) 		197.1
(-1.2) 		197.5
(-1.1) 		297.1
(3) 		144

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 478
1 2 3 4 5 6 range
A 184
(-2.1)
A 		131.2
(-2.9)
A 		127.8
(-3)
A 		220
(-1.6)
P 		424.3
(1.7)
P 		509.6
(3)
P 		382
B 133.8
(-2.8)
A 		119.4
(-3)
A 		128.5
(-2.9)
A 		201.7
(-1.9)
A 		418.2
(1)
P 		572.1
(3)
P 		453
C 150
(-2.3)
A 		132.7
(-2.6)
A 		97.1
(-3)
A 		156.2
(-2.3)
A 		295.3
(-0.5)
P 		575.5
(3)
P 		478
avr 155.9
(-2.5) 		127.8
(-2.9) 		117.8
(-3) 		192.6
(-2) 		379.3
(0.6) 		552.4
(3) 		435
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 53.5
(2.1)
A 		36.1
(-3)
A 		54.2
(2.3)
A 		56.6
(3)
P 		21
B 49.2
(-0.9)
A 		44.4
(-2.3)
A 		42
(-3)
A 		62.5
(3)
P 		21
C 51.9
(-0.2)
A 		70.5
(2.9)
P 		71
(3)
M 		35.7
(-3)
P 		35
avr 51.5
(-1.7) 		50.3
(-3) 		55.7
(3) 		51.6
(-1.6) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 189
1 2 3 4 5 6 range
A 33.9
(-2.6)
A 		46.7
(-1.9)
A 		27.8
(-3)
A 		55.8
(-1.3)
P 		128
(3)
P 		124.1
(2.8)
P 		100
B 46.6
(-2.5)
A 		39.8
(-2.7)
A 		31.2
(-3)
A 		53.4
(-2.3)
A 		169.9
(1.6)
P 		213.3
(3)
P 		182
C 55.6
(-1.9)
A 		40.5
(-2.4)
A 		24.7
(-3)
A 		31.4
(-2.8)
A 		95.6
(-0.5)
P 		192.6
(3)
P 		168
avr 45.4
(-2.3) 		42.3
(-2.4) 		27.9
(-3) 		46.9
(-2.2) 		131.2
(1.2) 		176.7
(3) 		149
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183811_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.215
Sequence Type Exemplar sequence
Representative Public ID K09H9.2 NCBI
Target Description K09H9.2 /REP_DB=WormBase Gene ID /WP=CE18037 /TR=O44992 /GB=AAB97569.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058708(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058708 NCBI Caenorhabditis elegans K09H9.2 (K09H9.2) mRNA, complete cds. 11/11 None
SNAP00000035324 ENSEMBL cdna:SNAP chromosome:CEL140:I:3143343:3150305:1 11/11 None
GENEFINDER00000035330 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:3148018:3150305:1 11/11 None
K09H9.2 ENSEMBL cdna:known chromosome:CEL140:I:3147889:3150330:1 gene:K09H9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3148017-3150305(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09H9.2
Entrez Gene 171887 Entrez gene
SwissProt O44992 EMBL-EBI
WormBase CE34336 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605135_AT similar to defective in sister chromatid cohesion homolog 1 cfa
CANINE_2:CFAAFFX.2235.1.S1_AT similar to defective in sister chromatid cohesion homolog 1 cfa
DROSOPHILA_2:1626286_AT dm
DROSGENOME1:147535_AT dm
CHICKEN:GGAAFFX.10506.1.S1_AT similar to hypothetical protein MGC5528 gga
HG-U133_PLUS_2:216646_AT defective in sister chromatid cohesion homolog 1 (S. cerevisiae) hs
HG-U133A_2:216646_AT defective in sister chromatid cohesion homolog 1 (S. cerevisiae) hs
HG-U133A:216646_AT defective in sister chromatid cohesion homolog 1 (S. cerevisiae) hs
HG-U133_PLUS_2:219000_S_AT defective in sister chromatid cohesion homolog 1 (S. cerevisiae) hs
HG-U133A:219000_S_AT defective in sister chromatid cohesion homolog 1 (S. cerevisiae) hs
HG-U133A_2:219000_S_AT defective in sister chromatid cohesion homolog 1 (S. cerevisiae) hs
U133_X3P:G13129095_3P_AT defective in sister chromatid cohesion homolog 1 (S. cerevisiae) hs
U133_X3P:HS.173310.2.A1_3P_S_AT defective in sister chromatid cohesion homolog 1 (S. cerevisiae) hs
U133_X3P:219000_3P_S_AT defective in sister chromatid cohesion homolog 1 (S. cerevisiae) hs
HG-U95E:73048_AT defective in sister chromatid cohesion homolog 1 (S. cerevisiae) hs
HG-U95E:74112_AT defective in sister chromatid cohesion homolog 1 (S. cerevisiae) hs
U133_X3P:HS2.334527.1.S1_3P_X_AT Defective in sister chromatid cohesion homolog 1 (S. cerevisiae) hs
U133_X3P:1552961_3P_AT Defective in sister chromatid cohesion homolog 1 (S. cerevisiae) hs
HG-U133_PLUS_2:1552961_AT Defective in sister chromatid cohesion homolog 1 (S. cerevisiae) hs
HG-U133_PLUS_2:242675_X_AT Defective in sister chromatid cohesion homolog 1 (S. cerevisiae) hs
HG-U133B:242675_X_AT Defective in sister chromatid cohesion homolog 1 (S. cerevisiae) hs
HU35KSUBB:RC_AA053962_AT Defective in sister chromatid cohesion homolog 1 (S. cerevisiae) hs
U133_X3P:242675_3P_X_AT Defective in sister chromatid cohesion homolog 1 (S. cerevisiae) hs
U133_X3P:HS.263479.0.A1_3P_AT Defective in sister chromatid cohesion homolog 1 (S. cerevisiae) hs
U133_X3P:HS.263479.0.A1_3P_X_AT Defective in sister chromatid cohesion homolog 1 (S. cerevisiae) hs
MG-U74CV2:165842_AT RIKEN cDNA 2600005O03 gene mm
MG-U74CV2:171219_R_AT RIKEN cDNA 2600005O03 gene mm
MG-U74CV2:169188_I_AT RIKEN cDNA 2600005O03 gene mm
MOE430B:1452912_AT RIKEN cDNA 2600005O03 gene mm
MOUSE430_2:1452912_AT RIKEN cDNA 2600005O03 gene mm
MOE430B:1436583_AT RIKEN cDNA 2600005O03 gene mm
MOUSE430_2:1436583_AT RIKEN cDNA 2600005O03 gene mm
MU19KSUBC:TC38720_AT RIKEN cDNA 2600005O03 gene (2600005O03Rik), mRNA mm
RG-U34C:RC_AI172555_AT similar to hypothetical protein MGC5528 rn
RAE230A:1374805_AT similar to hypothetical protein MGC5528 rn
RAT230_2:1374805_AT similar to hypothetical protein MGC5528 rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5507 copper ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_491109 K09H9.2 [Caenorhabditis elegans] gb|AAB97569.2| Hypothetical protein K09H9.2 [Caenorhabditis elegans] 0.0
blast CAE60549 Hypothetical protein CBG04176 [Caenorhabditis briggsae] 1.0E-172
blast CAE60549 Hypothetical protein CBG04176 [Caenorhabditis briggsae] 1.0E-170
blast AAH81483 Zgc:103507 [Danio rerio] ref|NP_001004611.1| hypothetical protein LOC447872 [Danio rerio] 2.0E-28
Sequence
Target Sequence 
>C. ELEGANS:183811_AT
ggtaattgactggttcctcaactcccgatgcgaacagaatcctgaggatcctttcaccta
ccgcctgcctgagatcaacctgatccgcgacctaaccgtcgtcattctctatggaaccca
aaaaatgcctctccaacagtttcgtgaactcctgcacaagattctaccatatggagtcac
tatgaacattgcccagctggaaggtgtcgccgatatttctgatgctccattcggaaaagt
gatctcatacctatcaccggaagatcttcctgatactattaaagaaagaatgttatatct
ttttgaatatcgaaaactctggtctatggagcaacttcgtccatatttcaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTAATTGACTGGTTCCTCAACTCC 99 505 1113 Antisense
CCTCAACTCCCGATGCGAACAGAAT 249 269 1128 Antisense
AGAATCCTGAGGATCCTTTCACCTA 137 75 1148 Antisense
GCCTGAGATCAACCTGATCCGCGAC 550 281 1179 Antisense
TGCCTCTCCAACAGTTTCGTGAACT 517 583 1238 Antisense
GTGAACTCCTGCACAAGATTCTACC 627 481 1256 Antisense
GGAGTCACTATGAACATTGCCCAGC 560 515 1285 Antisense
CATTGCCCAGCTGGAAGGTGTCGCC 559 217 1299 Antisense
GATATTTCTGATGCTCCATTCGGAA 406 427 1324 Antisense
TGATCTCATACCTATCACCGGAAGA 379 565 1352 Antisense
GAGCAACTTCGTCCATATTTCAAGG 67 391 1441 Antisense
Sequence Source Affymetrix Proprietary Database