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[183810_at]

Description R05A10.8 /REP_DB=WormBase Gene ID /WP=CE16294 /TR=O45705 /GB=CAB05269.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 43      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 3.7
(-2.5)
A 		28.8
(3)
A 		6.1
(-2)
A 		1.4
(-3)
A 		27
B 6
(0.8)
A 		8.1
(3)
A 		2.4
(-3)
A 		7.8
(2.7)
A 		6
C 12
(-0.8)
A 		25.6
(3)
A 		4.1
(-3)
A 		4.6
(-2.9)
A 		22
avr 7.2
(-1.9) 		20.8
(3) 		4.2
(-3) 		4.6
(-2.9) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 9
(-1.4)
A 		13.4
(0)
A 		6.5
(-2.2)
A 		22.7
(3)
A 		3.9
(-3)
A 		22.5
(2.9)
A 		19
B 17.7
(-0.2)
A 		32.5
(2.6)
A 		6.2
(-2.5)
A 		34.4
(3)
A 		24.7
(1.1)
A 		3.5
(-3)
A 		31
C 7.9
(-1.5)
A 		5.4
(-2.9)
A 		16
(3)
A 		5.2
(-3)
A 		6.9
(-2.1)
A 		13.1
(1.4)
A 		11
avr 11.5
(-2) 		17.1
(1) 		9.6
(-3) 		20.8
(3) 		11.8
(-1.8) 		13
(-1.2) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 1.4
(-1.8)
A 		6.2
(3)
A 		1.6
(-1.6)
A 		0.2
(-3)
A 		6
B 1.9
(2.6)
A 		2
(3)
A 		0.5
(-3)
A 		1.7
(1.8)
A 		2
C 4
(-0.1)
A 		7.4
(3)
A 		1.4
(-2.5)
A 		0.8
(-3)
A 		7
avr 2.4
(-0.9) 		5.2
(3) 		1.2
(-2.6) 		0.9
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.7
(-2.3)
A 		4.8
(1.7)
A 		1.4
(-2.7)
A 		5.8
(3)
A 		1.2
(-3)
A 		5.5
(2.6)
A 		5
B 6.2
(0.1)
A 		10.8
(3)
A 		1.5
(-2.9)
A 		9.1
(1.9)
A 		10
(2.5)
A 		1.3
(-3)
A 		10
C 2.9
(0.4)
A 		1.6
(-1.9)
A 		4.1
(2.5)
A 		1
(-3)
A 		2.2
(-0.9)
A 		4.4
(3)
A 		3
avr 3.6
(-0.7) 		5.7
(3) 		2.3
(-3) 		5.3
(2.3) 		4.5
(0.9) 		3.7
(-0.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183810_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9472
Sequence Type Exemplar sequence
Representative Public ID R05A10.8 NCBI
Target Description R05A10.8 /REP_DB=WormBase Gene ID /WP=CE16294 /TR=O45705 /GB=CAB05269.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070313(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070313 NCBI Caenorhabditis elegans R05A10.8 (R05A10.8) mRNA, complete cds. 11/11 None
SNAP00000012472 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14156258:14158017:-1 9/11 None
R05A10.8 ENSEMBL cdna:known chromosome:CEL140:IV:14154943:14158179:-1 gene:R05A10.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000012483 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14154948-14158185(-) 97.7 100.0
Public Domain and Genome References
Gene Title
Ensembl R05A10.8
Entrez Gene 187598 Entrez gene
SwissProt O45705 EMBL-EBI
WormBase CE16294 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB05269 Hypothetical protein R05A10.8 [Caenorhabditis elegans] ref|NP_502714.1| R05A10.8 [Caenorhabditis elegans] 1.0E-175
blast CAB05269 Hypothetical protein R05A10.8 [Caenorhabditis elegans] ref|NP_502714.1| R05A10.8 [Caenorhabditis elegans] 1.0E-117
blast CAB54371 Hypothetical protein Y105C5B.23 [Caenorhabditis elegans] ref|NP_502912.1| Y105C5B.23 [Caenorhabditis elegans] 4.0E-81
blast CAB54371 Hypothetical protein Y105C5B.23 [Caenorhabditis elegans] ref|NP_502912.1| Y105C5B.23 [Caenorhabditis elegans] 6.0E-63
blast AAB70362 Hypothetical protein K06H6.2 [Caenorhabditis elegans] ref|NP_503254.1| K06H6.2 [Caenorhabditis elegans] 9.0E-61
blast AAB70362 Hypothetical protein K06H6.2 [Caenorhabditis elegans] ref|NP_503254.1| K06H6.2 [Caenorhabditis elegans] 1.0E-45
Protein Domains
Database ID Description E-Value
Pfam IPR007744 EMBL-EBI Protein of unknown function DUF672 1.0E-126
Pfam IPR007744 EMBL-EBI Protein of unknown function DUF672 1.3E-107
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502714.1 1 45-67
R05A10.8 1 45-67
SNAP00000012472 1 10-32
Sequence
Target Sequence 
>C. ELEGANS:183810_AT
gaggcactgtgcctgacgaaggaaaaaattggaggatttaaagatggaggaaaatacgtt
tgcaaccccaaaaaggctggcaagaagaattgcacaattgtgtcacttggtctgaaaaat
caaataaattttgacctgcatattcagaatgtcactgatggccgttgtttgatactggga
gccgacaaggaccctcaaaaccaacaaactcaagaatcatatcggaaaataaacgggaaa
ttgtttactggaaagattccagatgagctaacaattccgtatatgcttgaaaaggcagga
aagcatgaagtggaactcctaaaaattgatatcgaagaaggcgagcttacgggtttggaa
ccactaattaaagatttttttgtgtgccagatcttcatagaggttcatggcacacccctg
aaacacttggatatgcttcagatcatggcaagaaagtatgaaacaagttttatggacagt
ttgagatttgaggctggacttggcaccaaacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGCACTGTGCCTGACGAAGGAAA 382 405 382 Antisense
GTTTGCAACCCCAAAAAGGCTGGCA 295 445 439 Antisense
TGCACAATTGTGTCACTTGGTCTGA 470 577 472 Antisense
GAATGTCACTGATGGCCGTTGTTTG 515 331 528 Antisense
GATGGCCGTTGTTTGATACTGGGAG 656 405 538 Antisense
ATACTGGGAGCCGACAAGGACCCTC 588 21 553 Antisense
GATGAGCTAACAATTCCGTATATGC 490 411 643 Antisense
GAAGAAGGCGAGCTTACGGGTTTGG 550 317 715 Antisense
TCATAGAGGTTCATGGCACACCCCT 206 619 776 Antisense
GCACACCCCTGAAACACTTGGATAT 147 315 791 Antisense
TTGAGGCTGGACTTGGCACCAAACC 663 705 869 Antisense
Sequence Source Affymetrix Proprietary Database