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[183809_at]

Description C03H5.5 /REP_DB=WormBase Gene ID /WP=CE07898 /TR=O16656 /GB=AAB66128.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 06      6grp_high1_10_10 > 50      6grp_highest_nonorm > 71      6grp_total > 30      4grp_total > 60      6grp_highest_sub > 04      6grp_high1_sub > 03_04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 306
1 2 3 4 range
A 298.5
(1.7)
P 		290
(1.5)
P 		355.7
(3)
P 		92.9
(-3)
A 		263
B 323.6
(3)
P 		300.3
(2.4)
P 		261.6
(1.4)
P 		84.4
(-3)
A 		239
C 259.4
(1.6)
P 		321.3
(3)
P 		256.2
(1.6)
P 		50.1
(-3)
A 		271
avr 293.8
(2.7) 		303.9
(3) 		291.2
(2.7) 		75.8
(-3) 		228

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 376
1 2 3 4 5 6 range
A 273.5
(0.4)
P 		353.8
(2.4)
P 		312.5
(1.4)
P 		375.4
(3)
P 		294.2
(0.9)
P 		142.3
(-3)
P 		233
B 340.3
(0.7)
P 		455.2
(3)
P 		369
(1.2)
P 		418.8
(2.3)
P 		285.6
(-0.5)
P 		161.2
(-3)
P 		294
C 285.3
(-0.7)
P 		457.2
(2.1)
P 		484.4
(2.5)
P 		516.5
(3)
P 		211.2
(-1.9)
P 		140.5
(-3)
P 		376
avr 299.7
(0.2) 		422.1
(2.7) 		388.6
(2) 		436.9
(3) 		263.7
(-0.6) 		148
(-3) 		289
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 100
1 2 3 4 range
A 108.7
(3)
P 		62.9
(0.1)
P 		93
(2)
P 		13.6
(-3)
A 		95
B 103.2
(3)
P 		74.2
(1)
P 		60.6
(0)
P 		18
(-3)
A 		85
C 85.9
(2.5)
P 		92.4
(3)
P 		89.3
(2.8)
P 		8.4
(-3)
A 		84
avr 99.3
(3) 		76.5
(1.4) 		81
(1.7) 		13.3
(-3) 		86

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 117
1 2 3 4 5 6 range
A 50.4
(-2)
P 		125.8
(3)
P 		68
(-0.8)
P 		95.2
(1)
P 		88.8
(0.6)
P 		34.7
(-3)
P 		91
B 118.4
(0.8)
P 		151.5
(3)
P 		89.6
(-1.1)
P 		110.9
(0.3)
P 		116
(0.7)
P 		60.1
(-3)
P 		91
C 105.8
(0.8)
P 		139.5
(3)
P 		123.3
(1.9)
P 		103.9
(0.7)
P 		68.4
(-1.6)
P 		47
(-3)
P 		93
avr 91.5
(-0.1) 		138.9
(3) 		93.6
(0) 		103.3
(0.7) 		91.1
(-0.1) 		47.3
(-3) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183809_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5944
Sequence Type Exemplar sequence
Representative Public ID C03H5.5 NCBI
Target Description C03H5.5 /REP_DB=WormBase Gene ID /WP=CE07898 /TR=O16656 /GB=AAB66128.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061320(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061320 NCBI Caenorhabditis elegans C03H5.5 (C03H5.5) mRNA, complete cds. 11/11 None
SNAP00000020966 ENSEMBL cdna:SNAP chromosome:CEL140:II:382365:393250:-1 11/11 None
GENEFINDER00000020973 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:382365:385353:-1 11/11 None
C03H5.5 ENSEMBL cdna:known chromosome:CEL140:II:382272:385353:-1 gene:C03H5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:382271-385353(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C03H5.5
Entrez Gene 182182 Entrez gene
SwissProt O16656 EMBL-EBI
WormBase CE07898 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB66128 Hypothetical protein C03H5.5 [Caenorhabditis elegans] ref|NP_493721.1| C03H5.5 [Caenorhabditis elegans] 0.0
blast CAE62789 Hypothetical protein CBG06962 [Caenorhabditis briggsae] 1.0E-80
blast CAE62789 Hypothetical protein CBG06962 [Caenorhabditis briggsae] 4.0E-74
blast AAM54207 Hypothetical protein C17G10.9b [Caenorhabditis elegans] ref|NP_740994.1| C17G10.9b [Caenorhabditis elegans] 1.0E-23
Sequence
Target Sequence 
>C. ELEGANS:183809_AT
gcagaatgctcgtcattcatcccacaacttccccgcaataacaaactgagtctacactgg
aaatctcaaaacttgaagtcaatggtattctatctccaacgcgtcacgacatggaaaccc
ctgagaaatttgaagggcctcttaaaaatttgccctgtattacctttggaagctcgtgca
acttccttgttgcctgtgtccacttcttcagatatcgattatttctgccaatacgatagt
ttcctgaaccgtctggtcaccgtgaaaccatctaagctcacaaaaatcttccaagacttt
cctgacgcaaatcgccagaaaactcttgtcttcctaatcatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAGAATGCTCGTCATTCATCCCAC 27 313 1120 Antisense
ACAACTTCCCCGCAATAACAAACTG 638 109 1143 Antisense
CAATGGTATTCTATCTCCAACGCGT 541 183 1199 Antisense
AACGCGTCACGACATGGAAACCCCT 322 143 1217 Antisense
TTTGCCCTGTATTACCTTTGGAAGC 474 669 1268 Antisense
AAGCTCGTGCAACTTCCTTGTTGCC 605 147 1289 Antisense
GTGTCCACTTCTTCAGATATCGATT 690 487 1315 Antisense
ACGATAGTTTCCTGAACCGTCTGGT 48 83 1352 Antisense
AACCGTCTGGTCACCGTGAAACCAT 85 145 1366 Antisense
TCTTCCAAGACTTTCCTGACGCAAA 568 617 1406 Antisense
AAAACTCTTGTCTTCCTAATCATGA 263 131 1438 Antisense
Sequence Source Affymetrix Proprietary Database