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[183808_at]

Description Y94A7B.9 /REP_DB=WormBase Gene ID /WP=CE26314 /TR=Q9GRU9 /GB=CAC15864.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 71      4grp_total > 16      6grp_cgc > 84      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 73
1 2 3 4 range
A 5.8
(-2.8)
A 		5.6
(-3)
A 		11
(3)
A 		9.3
(1.1)
A 		5
B 2.4
(-3)
A 		13.2
(-1.2)
A 		39.3
(3)
A 		6.8
(-2.3)
A 		37
C 2.9
(-2.9)
A 		10.6
(-2.3)
A 		1.8
(-3)
A 		74.3
(3)
A 		73
avr 3.7
(-3) 		9.8
(-1.6) 		17.4
(0.1) 		30.1
(3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 2.2
(-3)
A 		4.9
(-2.1)
A 		20.4
(3)
A 		14.2
(1)
A 		4.3
(-2.3)
A 		6.5
(-1.6)
A 		18
B 4.8
(-2.7)
A 		3.9
(-3)
A 		5.5
(-2.5)
A 		24.5
(3)
A 		13.2
(-0.3)
A 		4.3
(-2.9)
A 		21
C 2.3
(-2.8)
A 		32
(3)
A 		5.7
(-2.2)
A 		12.9
(-0.7)
A 		1.4
(-3)
A 		2.8
(-2.7)
A 		31
avr 3.1
(-3) 		13.6
(1.5) 		10.5
(0.1) 		17.2
(3) 		6.3
(-1.6) 		4.5
(-2.4) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.1
(0.2)
A 		1.2
(-3)
A 		2.9
(3)
A 		1.4
(-2.3)
A 		2
B 0.8
(-3)
A 		3.3
(-1.2)
A 		9.1
(3)
A 		1.5
(-2.5)
A 		8
C 1
(-2.8)
A 		3
(-1.8)
A 		0.6
(-3)
A 		12.5
(3)
A 		12
avr 1.3
(-3) 		2.5
(-1.1) 		4.2
(1.6) 		5.1
(3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.4
(-3)
A 		1.8
(-0.9)
A 		4.4
(3)
A 		3.6
(1.8)
A 		1.3
(-1.7)
A 		1.6
(-1.2)
A 		4
B 1.7
(-2.5)
A 		1.3
(-3)
A 		1.3
(-3)
A 		6.5
(3)
A 		5.4
(1.7)
A 		1.6
(-2.7)
A 		5
C 0.9
(-2.7)
A 		9.8
(3)
A 		1.5
(-2.4)
A 		2.6
(-1.6)
A 		0.5
(-3)
A 		0.9
(-2.7)
A 		9
avr 1
(-3) 		4.3
(3) 		2.4
(-0.5) 		4.2
(2.8) 		2.4
(-0.5) 		1.4
(-2.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183808_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13869
Sequence Type Exemplar sequence
Representative Public ID Y94A7B.9 NCBI
Target Description Y94A7B.9 /REP_DB=WormBase Gene ID /WP=CE26314 /TR=Q9GRU9 /GB=CAC15864.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075100(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075100 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-304) (srh-304) mRNA, complete cds. 11/11 None
Y94A7B.9 ENSEMBL cdna:known chromosome:CEL140:V:17831186:17832559:1 gene:Y94A7B.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000042698 7/11 Cross Hyb Matching Probes None
GENEFINDER00000042700 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17831185-17832559(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-304
Ensembl Y94A7B.9
Entrez Gene 190798 Entrez gene
SwissProt Q9GRU9 EMBL-EBI
WormBase CE26314 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAC15864 Hypothetical protein Y94A7B.9 [Caenorhabditis elegans] ref|NP_507501.1| Serpentine Receptor, class H family member (srh-304) [Caenorhabditis elegans] 1.0E-175
blast CAC15863 Hypothetical protein Y94A7B.7 [Caenorhabditis elegans] ref|NP_507502.1| Serpentine Receptor, class H family member (srh-303) [Caenorhabditis elegans] 1.0E-136
blast CAC15865 Hypothetical protein Y94A7B.8 [Caenorhabditis elegans] ref|NP_507500.2| Serpentine Receptor, class H family member (srh-301) [Caenorhabditis elegans] 2.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507501.1 7 15-36,49-71,91-113,134-156,193-215,244-266,276-298
Y94A7B.9 7 15-36,49-71,91-113,134-156,193-215,244-266,276-298
Sequence
Target Sequence 
>C. ELEGANS:183808_AT
ggcaatatctacgttatccgtttctaatgctcaactacgcacttgcactggtctactgca
tttcaatttacatagaagttccggtagatcaaaataaagccagacaatttctgtttaaat
ctcatcctcaagcctgcaaggtgatcactgataagtctaaaatattcgtgatgaactttg
aagaggatatttggccggcgatacggcagaatgcgctgaccagttttgtcttggcagaga
ttatattgctcggtgtgttgataaagatggaaatgaatagagcgattaagaacatccagt
cgtcattatcactagataccctccaaaagcagaaaaagtgcattagagccttgaatctac
agatcgccattccaattgcaattatcttcttaccagccgtaatttccgcaattctaaaaa
tgaaaagttccagccaacaaggtgttgataaccttctaaaccttactacctcacttcacg
gagtatctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCAATATCTACGTTATCCGTTTCT 137 535 395 Antisense
ATCCGTTTCTAATGCTCAACTACGC 509 37 410 Antisense
TCAACTACGCACTTGCACTGGTCTA 85 631 425 Antisense
CACTGGTCTACTGCATTTCAATTTA 202 199 440 Antisense
TCTCATCCTCAAGCCTGCAAGGTGA 321 611 514 Antisense
GAAGAGGATATTTGGCCGGCGATAC 383 337 574 Antisense
GAATGCGCTGACCAGTTTTGTCTTG 348 331 603 Antisense
AAGAACATCCAGTCGTCATTATCAC 64 153 682 Antisense
ACAGATCGCCATTCCAATTGCAATT 49 109 753 Antisense
TTCTTACCAGCCGTAATTTCCGCAA 591 689 781 Antisense
ACTACCTCACTTCACGGAGTATCTG 513 101 859 Antisense
Sequence Source Affymetrix Proprietary Database