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[183807_at]

Description K07D4.5 /REP_DB=WormBase Gene ID /WP=CE19529 /TR=O76574 /GB=AAC26289.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 15      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 134.4
(-0.3)
P 		100
(-3)
A 		106.5
(-2.5)
A 		176.3
(3)
P 		76
B 188.6
(3)
P 		20.3
(-3)
A 		100
(-0.2)
A 		92.2
(-0.4)
A 		168
C 195
(3)
P 		90.1
(-3)
A 		94.9
(-2.7)
A 		174.4
(1.8)
P 		105
avr 172.7
(3) 		70.1
(-3) 		100.5
(-1.2) 		147.6
(1.5) 		103

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 50.2
(-1.7)
A 		116
(1.7)
P 		139.7
(3)
P 		101.7
(1)
A 		26.5
(-3)
A 		68
(-0.8)
A 		113
B 102
(3)
P 		44.6
(-1.7)
A 		94.1
(2.4)
A 		28.3
(-3)
A 		81.9
(1.4)
A 		36.6
(-2.3)
A 		74
C 146.5
(1)
P 		183.4
(3)
M 		94.2
(-1.8)
A 		124.4
(-0.2)
A 		80.3
(-2.5)
A 		71.7
(-3)
A 		112
avr 99.6
(1.4) 		114.7
(3) 		109.3
(2.4) 		84.8
(-0.2) 		62.9
(-2.6) 		58.8
(-3) 		56
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 48.9
(3)
P 		21.7
(-3)
A 		27.8
(-1.7)
A 		25.8
(-2.1)
P 		27
B 60.1
(3)
P 		5
(-3)
A 		23.2
(-1)
A 		19.6
(-1.4)
A 		55
C 64.5
(3)
P 		25.9
(-3)
A 		33.1
(-1.9)
A 		29.4
(-2.5)
P 		39
avr 57.8
(3) 		17.5
(-3) 		28
(-1.4) 		24.9
(-1.9) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 9.2
(-2.8)
A 		41.3
(3)
P 		30.4
(1)
P 		25.8
(0.2)
A 		8
(-3)
A 		16.6
(-1.5)
A 		33
B 35.5
(3)
P 		14.8
(-1.4)
A 		22.9
(0.3)
A 		7.5
(-3)
A 		33.3
(2.5)
A 		13.7
(-1.7)
A 		28
C 54.3
(2.7)
P 		56
(3)
M 		24
(-3)
A 		25
(-2.8)
A 		26
(-2.6)
A 		24
(-3)
A 		32
avr 33
(1.6) 		37.4
(3) 		25.8
(-0.6) 		19.4
(-2.6) 		22.4
(-1.7) 		18.1
(-3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183807_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5786
Sequence Type Exemplar sequence
Representative Public ID K07D4.5 NCBI
Target Description K07D4.5 /REP_DB=WormBase Gene ID /WP=CE19529 /TR=O76574 /GB=AAC26289.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062308(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062308 NCBI Caenorhabditis elegans K07D4.5 (K07D4.5) mRNA, complete cds. 10/11 None
SNAP00000021597 ENSEMBL cdna:SNAP chromosome:CEL140:II:4020476:4025551:-1 9/11 None
GENEFINDER00000021606 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4020476:4025551:-1 9/11 None
K07D4.5 ENSEMBL cdna:known chromosome:CEL140:II:4020498:4023841:-1 gene:K07D4.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4020474-4023841(-) 71.77 100.0
Public Domain and Genome References
Gene Title
Ensembl K07D4.5
Entrez Gene 187109 Entrez gene
SwissProt O76574 EMBL-EBI
WormBase CE35991 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE56299 Hypothetical protein CBG23955 [Caenorhabditis briggsae] 2.0E-25
blast AAC26289 Hypothetical protein K07D4.5 [Caenorhabditis elegans] ref|NP_494709.2| K07D4.5 [Caenorhabditis elegans] 2.0E-24
blast CAE59671 Hypothetical protein CBG03093 [Caenorhabditis briggsae] 1.0E-17
Sequence
Target Sequence 
>C. ELEGANS:183807_AT
tgcacccgacattttcagttttcaatctttcatcatacaaaaataaatacttagaatttt
ggcgaaacccgattacaattcacaatcacgccgaggctaatgtccgcattcgatgtcaat
ctatcaagactgatttcaaggatacatttctaggcccactggatgaaatttcatttgaat
tttatgatattgatagagctcagaaatttccgaataaaaaaaatttaaaattgagcaaaa
ataaaaatttcttgagaaaaattttagaaaaaattgaaattgatattctcgccgaaaata
ttatttcaaaattaaaattatatttgaagttctcaccaaaaaattttaaaaattttgaaa
ttgttttaaattttggagatgcccatttttggtgtgacgcctacggtcttttcgggtttt
acgaatcttttgatgttttcggaagaagtgcaccaaatcggagaaatcaaacttggttcc
tgcgcaacgacggactttacctagagcacgaaacaaaccgagcccgtgaatggcaatgga
tgtaccctccacttgattcttatgcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCACCCGACATTTTCAGTTTTCAA 603 577 17 Antisense
GGCGAAACCCGATTACAATTCACAA 105 543 77 Antisense
GAGGCTAATGTCCGCATTCGATGTC 399 405 109 Antisense
GTCCGCATTCGATGTCAATCTATCA 4 477 118 Antisense
CAAGGATACATTTCTAGGCCCACTG 20 185 153 Antisense
GATGCCCATTTTTGGTGTGACGCCT 209 415 394 Antisense
AAATCAAACTTGGTTCCTGCGCAAC 126 117 480 Antisense
CTGCGCAACGACGGACTTTACCTAG 354 235 496 Antisense
AGAGCACGAAACAAACCGAGCCCGT 536 69 519 Antisense
AACCGAGCCCGTGAATGGCAATGGA 140 147 532 Antisense
TACCCTCCACTTGATTCTTATGCAA 668 649 559 Antisense
Sequence Source Affymetrix Proprietary Database