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[183806_at]

Description F43G6.10 /REP_DB=WormBase Gene ID /WP=CE20790 /TR=Q9XVX2 /GB=CAA90403.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 87      4grp_total > 26      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 5.9
(-3)
A 		14.6
(-1.7)
A 		13.8
(-1.8)
A 		46.1
(3)
A 		40
B 11.4
(-0.5)
A 		6.3
(-3)
A 		18.5
(3)
A 		16.2
(1.9)
A 		12
C 3.5
(-3)
A 		45.7
(3)
A 		8.8
(-2.2)
A 		40
(2.2)
A 		42
avr 6.9
(-3) 		22.2
(0.4) 		13.7
(-1.5) 		34.1
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 17.5
(-3)
A 		41.9
(0.2)
A 		22.3
(-2.4)
A 		46.4
(0.8)
A 		55.8
(2)
A 		63.4
(3)
P 		46
B 47
(-1.7)
A 		52.8
(-1.1)
A 		67.7
(0.3)
A 		33.4
(-3)
A 		51.3
(-1.3)
A 		96.2
(3)
P 		63
C 18.8
(-2.3)
A 		6.8
(-3)
A 		26.6
(-1.8)
A 		40.6
(-0.9)
A 		60.3
(0.3)
A 		105
(3)
P 		98
avr 27.8
(-3) 		33.8
(-2.4) 		38.9
(-1.9) 		40.1
(-1.8) 		55.8
(-0.2) 		88.2
(3) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.1
(-3)
A 		3.2
(-1.6)
A 		3.6
(-1.1)
A 		6.8
(3)
A 		5
B 3.7
(1.7)
A 		1.5
(-3)
A 		4.3
(3)
A 		3.4
(1.1)
A 		3
C 1.2
(-3)
A 		13.1
(3)
A 		3.1
(-2)
A 		6.7
(-0.2)
A 		12
avr 2.3
(-3) 		5.9
(3) 		3.7
(-0.7) 		5.6
(2.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 3.2
(-3)
A 		14.9
(2.2)
A 		4.8
(-2.3)
A 		11.8
(0.8)
A 		16.8
(3)
A 		15.4
(2.4)
P 		14
B 16.4
(-1.3)
A 		17.6
(-1.1)
A 		16.4
(-1.3)
A 		8.8
(-3)
A 		20.8
(-0.3)
A 		35.9
(3)
P 		27
C 7
(-2.1)
A 		2.1
(-3)
A 		6.8
(-2.1)
A 		8.2
(-1.9)
A 		19.5
(0.2)
A 		35.1
(3)
P 		33
avr 8.9
(-3) 		11.5
(-2.2) 		9.3
(-2.9) 		9.6
(-2.8) 		19
(0) 		28.8
(3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183806_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3952
Sequence Type Exemplar sequence
Representative Public ID F43G6.10 NCBI
Target Description F43G6.10 /REP_DB=WormBase Gene ID /WP=CE20790 /TR=Q9XVX2 /GB=CAA90403.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064120(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064120 NCBI Caenorhabditis elegans F43G6.10 (F43G6.10) mRNA, complete cds. 11/11 None
SNAP00000023957 ENSEMBL cdna:SNAP chromosome:CEL140:II:11809260:11810087:1 11/11 None
GENEFINDER00000023969 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11809260:11810087:1 11/11 None
F43G6.10 ENSEMBL cdna:known chromosome:CEL140:II:11809260:11810194:1 gene:F43G6.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11809256-11810084(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F43G6.10
Entrez Gene 174813 Entrez gene
SwissProt Q9XVX2 EMBL-EBI
WormBase CE20790 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA90403 Hypothetical protein F43G6.10 [Caenorhabditis elegans] ref|NP_496521.1| F43G6.10 [Caenorhabditis elegans] 3.0E-26
Sequence
Target Sequence 
>C. ELEGANS:183806_AT
ggatgcttttcccgcagaaacaatgaggtcggacaacgaccaaatctccagccgcctctg
ccaccagcacaagtggaacgaatcggggatcctatagttcgagatccagccgaacccgcc
cagcccatgttcctgccacctcgccagccaccgggtcaagcaccaaatccacgaacagtg
gaaatcattcacgatgaacttgaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATGCTTTTCCCGCAGAAACAATG 266 513 19 Antisense
GCAGAAACAATGAGGTCGGACAACG 369 311 32 Antisense
GTCGGACAACGACCAAATCTCCAGC 124 473 46 Antisense
CCTCTGCCACCAGCACAAGTGGAAC 572 267 73 Antisense
AAGTGGAACGAATCGGGGATCCTAT 91 159 89 Antisense
GAATCGGGGATCCTATAGTTCGAGA 415 327 98 Antisense
ATCCTATAGTTCGAGATCCAGCCGA 113 37 107 Antisense
ATAGTTCGAGATCCAGCCGAACCCG 685 1 112 Antisense
AAGCACCAAATCCACGAACAGTGGA 595 149 176 Antisense
GAACAGTGGAAATCATTCACGATGA 182 351 191 Antisense
GAAATCATTCACGATGAACTTGAAC 402 363 199 Antisense
Sequence Source Affymetrix Proprietary Database