[Home] | [Total List]

[183805_at] 7TM receptor, srx family

Description C01G10.3 /REP_DB=WormBase Gene ID /WP=CE07812 /TR=Q93163 /GB=CAB02705.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 22      4grp_total > 20      6grp_cgc > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 23.9
(-0.1)
A 		4.6
(-3)
A 		14.9
(-1.4)
A 		44.2
(3)
A 		40
B 47.3
(3)
A 		37.5
(1.7)
A 		2.9
(-3)
A 		41.9
(2.3)
A 		44
C 21.8
(-3)
A 		51.5
(-1.2)
A 		27.6
(-2.6)
A 		118.9
(3)
P 		97
avr 31
(-1.2) 		31.2
(-1.2) 		15.1
(-3) 		68.3
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 32.8
(0.5)
A 		16
(-1.4)
A 		55.3
(3)
A 		11.3
(-1.9)
A 		16
(-1.4)
A 		1.9
(-3)
A 		53
B 33.5
(3)
A 		24.6
(0.8)
A 		28.2
(1.7)
A 		9.6
(-3)
A 		31.8
(2.6)
A 		10.8
(-2.7)
A 		24
C 22.7
(-1)
A 		63.5
(3)
M 		2.6
(-3)
A 		7.3
(-2.5)
A 		29.2
(-0.4)
A 		7.1
(-2.6)
A 		61
avr 29.7
(1.9) 		34.7
(3) 		28.7
(1.7) 		9.4
(-2.4) 		25.7
(1.1) 		6.6
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 8.7
(3)
A 		1
(-3)
A 		3.9
(-0.7)
A 		6.5
(1.3)
A 		8
B 15.1
(3)
A 		9.3
(0.6)
A 		0.7
(-3)
A 		8.9
(0.4)
A 		14
C 7.2
(-3)
A 		14.8
(0.5)
A 		9.6
(-1.9)
A 		20.1
(3)
P 		13
avr 10.3
(1.7) 		8.4
(0.1) 		4.7
(-3) 		11.8
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 6
(-0.1)
A 		5.7
(-0.3)
A 		12
(3)
A 		2.9
(-1.7)
A 		4.8
(-0.8)
A 		0.5
(-3)
A 		12
B 11.6
(2.2)
A 		8.2
(0.3)
A 		6.9
(-0.5)
A 		2.6
(-3)
A 		12.9
(3)
A 		4
(-2.2)
A 		10
C 8.4
(-0.5)
A 		19.4
(3)
M 		0.7
(-3)
A 		1.5
(-2.7)
A 		9.4
(-0.2)
A 		2.4
(-2.5)
A 		19
avr 8.7
(1.4) 		11.1
(3) 		6.5
(-0.1) 		2.3
(-3) 		9
(1.6) 		2.3
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183805_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13680
Sequence Type Exemplar sequence
Representative Public ID C01G10.3 NCBI
Target Description C01G10.3 /REP_DB=WormBase Gene ID /WP=CE07812 /TR=Q93163 /GB=CAB02705.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074319(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074319 NCBI Caenorhabditis elegans Serpentine Receptor, class X family member (srx-78) (srx-78) mRNA, complete cds. 11/11 None
GENEFINDER00000004632 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:15097635:15099930:1 9/11 None
C01G10.3 ENSEMBL cdna:known chromosome:CEL140:V:15097635:15099930:1 gene:C01G10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15098198-15099930(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM receptor, srx family
Gene Symbol srx-78
Ensembl C01G10.3
Entrez Gene 182080 Entrez gene
SwissProt Q93163 EMBL-EBI
WormBase CE36264 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02705 Hypothetical protein C01G10.3 [Caenorhabditis elegans] ref|NP_506720.2| Serpentine Receptor, class X family member (srx-78) [Caenorhabditis elegans] 0.0
blast CAB02705 Hypothetical protein C01G10.3 [Caenorhabditis elegans] ref|NP_506720.2| Serpentine Receptor, class X family member (srx-78) [Caenorhabditis elegans] 1.0E-158
blast CAB02704 Hypothetical protein C01G10.2 [Caenorhabditis elegans] ref|NP_506721.1| Serpentine Receptor, class X family member (srx-79) [Caenorhabditis elegans] 4.0E-99
blast CAB02704 Hypothetical protein C01G10.2 [Caenorhabditis elegans] ref|NP_506721.1| Serpentine Receptor, class X family member (srx-79) [Caenorhabditis elegans] 2.0E-86
blast CAE64164 Hypothetical protein CBG08785 [Caenorhabditis briggsae] 6.0E-76
blast CAE64164 Hypothetical protein CBG08785 [Caenorhabditis briggsae] 5.0E-64
Protein Domains
Database ID Description E-Value
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 1.5E-77
Pfam IPR003845 EMBL-EBI Protein of unknown function DUF216 3.4E-62
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506720.2 8 25-47,68-90,95-117,129-151,189-211,232-250,255-277,298-320
C01G10.3 8 25-47,68-90,95-117,129-151,189-211,232-250,255-277,298-320
GENEFINDER00000004632 6 25-47,68-90,95-117,129-151,189-211,232-250
Sequence
Target Sequence 
>C. ELEGANS:183805_AT
atatcattttctgccgaacacttggcttacggtggcacgttggcagcacctgactatttt
tttgagtggtctgtgttgtcaatcatctttccactttttatcaatgcagtaacatatatt
cgtttttattatttggtgggaagtttgcttcagaaaaagcggacaagtcgggagtctcaa
caccggagaaaagcaagggaaaatgtagcacagttttttcaaactgtttttcaagactca
ttgtttttcataagtagtacttttggcttgaagttgaatacaattattgcacaccgattc
tggacgttcttctgctttacatttgtgtggcaatttattcatgttcttgatggtgaaaca
gaacattcaaaacctaaaaaactgaaaaattggaaaatcaaaaaactaaaatttttcatt
tatatcttgaatgcgaaattaatggagaaaattcgattcatcatgatgatgttcaatgct
cgcttgtccccaatgaaaagaagactgaaaattaatataatcgagacaattacaaaattt
gatactcgaaaggttttgccaactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATATCATTTTCTGCCGAACACTTGG 64 21 274 Antisense
GAACACTTGGCTTACGGTGGCACGT 640 351 289 Antisense
GGCAGCACCTGACTATTTTTTTGAG 709 535 315 Antisense
GAGTGGTCTGTGTTGTCAATCATCT 20 403 337 Antisense
TCAATCATCTTTCCACTTTTTATCA 550 633 352 Antisense
CAAGTCGGGAGTCTCAACACCGGAG 145 177 437 Antisense
TACAATTATTGCACACCGATTCTGG 247 641 552 Antisense
ACGTTCTTCTGCTTTACATTTGTGT 276 95 577 Antisense
GATGATGTTCAATGCTCGCTTGTCC 479 411 738 Antisense
GCTCGCTTGTCCCCAATGAAAAGAA 247 299 751 Antisense
GATACTCGAAAGGTTTTGCCAACTC 127 423 814 Antisense
Sequence Source Affymetrix Proprietary Database