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[183803_at]

Description C30E1.4 /REP_DB=WormBase Gene ID /WP=CE08471 /TR=O17334 /GB=AAB71249.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 03      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 63.1
(-2.4)
A 		47.7
(-3)
A 		88.3
(-1.5)
A 		210.4
(3)
A 		163
B 68
(-2.9)
A 		88
(-0.7)
A 		67.1
(-3)
A 		122.5
(3)
P 		55
C 91
(-1.1)
A 		79.6
(-1.5)
A 		24.2
(-3)
A 		238.8
(3)
P 		215
avr 74
(-2.4) 		71.8
(-2.5) 		59.9
(-3) 		190.6
(3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 52.8
(0.5)
A 		32.2
(-1)
A 		85.4
(3)
P 		7.9
(-2.9)
A 		38.7
(-0.5)
A 		6
(-3)
A 		79
B 43.2
(-0.4)
A 		88.9
(3)
A 		9.8
(-2.9)
A 		36.5
(-0.9)
A 		8.8
(-3)
A 		21.7
(-2)
A 		80
C 6.9
(-2.9)
A 		98.9
(3)
P 		22.9
(-1.8)
A 		25.1
(-1.7)
A 		6.3
(-2.9)
A 		4.8
(-3)
A 		94
avr 34.3
(-0.7) 		73.3
(3) 		39.4
(-0.3) 		23.2
(-1.8) 		17.9
(-2.3) 		10.8
(-3) 		63
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 23
(0.7)
A 		10.3
(-3)
A 		23.1
(0.7)
A 		30.8
(3)
A 		21
B 21.7
(0.5)
A 		21.7
(0.5)
A 		15.6
(-3)
A 		26.1
(3)
P 		11
C 30.1
(1.1)
A 		22.9
(-0.3)
A 		8.4
(-3)
A 		40.3
(3)
P 		32
avr 24.9
(0.3) 		18.3
(-2.1) 		15.7
(-3) 		32.4
(3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 9.7
(-0.1)
A 		11.5
(0.5)
A 		18.6
(3)
P 		2
(-2.8)
A 		11.7
(0.6)
A 		1.5
(-3)
A 		17
B 15
(-0.2)
A 		29.6
(3)
A 		2.4
(-3)
A 		9.7
(-1.4)
A 		3.6
(-2.7)
A 		8.1
(-1.7)
A 		27
C 2.6
(-2.8)
A 		30.2
(3)
P 		5.8
(-2.1)
A 		5.1
(-2.3)
A 		2.1
(-2.9)
A 		1.6
(-3)
A 		29
avr 9.1
(-1.4) 		23.8
(3) 		8.9
(-1.4) 		5.6
(-2.4) 		5.8
(-2.4) 		3.7
(-3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183803_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17545
Sequence Type Exemplar sequence
Representative Public ID C30E1.4 NCBI
Target Description C30E1.4 /REP_DB=WormBase Gene ID /WP=CE08471 /TR=O17334 /GB=AAB71249.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078338(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078338 NCBI Caenorhabditis elegans C30E1.4 (C30E1.4) mRNA, complete cds. 11/11 None
GENEFINDER00000041129 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16921766:16927681:1 9/11 None
C30E1.4 ENSEMBL cdna:known chromosome:CEL140:X:16923849:16925713:1 gene:C30E1.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000041127 3/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16923848-16925713(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30E1.4
Entrez Gene 183047 Entrez gene
SwissProt O17334 EMBL-EBI
WormBase CE08471 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71250 Hypothetical protein C30E1.5 [Caenorhabditis elegans] ref|NP_510738.1| C30E1.5 [Caenorhabditis elegans] 0.0
blast CAE56315 Hypothetical protein CBG23978 [Caenorhabditis briggsae] 1.0E-150
blast CAA19499 Hypothetical protein Y37H2C.1 [Caenorhabditis elegans] ref|NP_507576.1| Y37H2C.1 [Caenorhabditis elegans] 1.0E-150
blast AAB71249 Hypothetical protein C30E1.4 [Caenorhabditis elegans] ref|NP_510739.1| C30E1.4 [Caenorhabditis elegans] 1.0E-136
blast AAB53818 Hypothetical protein C08A9.5 [Caenorhabditis elegans] ref|NP_510763.1| C08A9.5 [Caenorhabditis elegans] 3.0E-56
blast CAA19499 Hypothetical protein Y37H2C.1 [Caenorhabditis elegans] ref|NP_507576.1| Y37H2C.1 [Caenorhabditis elegans] 6.0E-43
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000041129 9 537-559,615-637,663-685,711-728,733-755,767-786,791-813,854-873,877-899
Sequence
Target Sequence 
>C. ELEGANS:183803_AT
atcacgtcgttattcactgttcatttggaaaacaatttgacggtaataattttgtttaac
ttgtgctttaatttttttcagttgtctgcatttcgagtgtccatcgcttcagacagtgca
tctctgaacaacccgttcaatgtaaatttttatcacgcaaagacgattcataacattgtg
ctacaccagccgatacacttatcagtcgcaagctattcccaaagtgttttcagtttgaaa
gtagaatcggtcgaaaattttctcattggaagcaataagttcaactcaagtgcaagtcct
tcggcacctcgctattacatgtacacgtttcctgatgacgtggacaaagtaaatataaga
gtcacgtctgaaactgaaatttgtgggaaaatagtgacccgtcaagtcaagtgcccattg
ttcgaagcttcaggattggtggagctgagcgatgctcatttctttcaaaccttcacaaaa
tttgcaggattttcgataagaaaaaattacattggccgtcagtttcatattgctttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCACGTCGTTATTCACTGTTCATT 278 29 139 Antisense
AGTTGTCTGCATTTCGAGTGTCCAT 610 63 218 Antisense
GTGTCCATCGCTTCAGACAGTGCAT 561 485 235 Antisense
GACAGTGCATCTCTGAACAACCCGT 628 367 250 Antisense
ACCAGCCGATACACTTATCAGTCGC 648 85 323 Antisense
CAGTCGCAAGCTATTCCCAAAGTGT 500 205 341 Antisense
TCAAGTGCAAGTCCTTCGGCACCTC 587 631 424 Antisense
GGCACCTCGCTATTACATGTACACG 127 537 441 Antisense
GTCAAGTGCCCATTGTTCGAAGCTT 22 461 544 Antisense
TGAGCGATGCTCATTTCTTTCAAAC 59 569 584 Antisense
TGGCCGTCAGTTTCATATTGCTTTT 484 543 651 Antisense
Sequence Source Affymetrix Proprietary Database