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[183802_at]

Description T05E7.4 /REP_DB=WormBase Gene ID /WP=CE13237 /TR=O01859 /GB=AAB54216.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 17      6grp_highest_nonorm > 60      6grp_total > 06      4grp_total > 12      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 223.9
(-0.2)
P 		215.9
(-0.6)
A 		165.4
(-3)
A 		290.2
(3)
P 		125
B 232.5
(-1.8)
P 		218.7
(-2.4)
A 		205.3
(-3)
A 		338.1
(3)
P 		133
C 246.6
(2.2)
P 		202.2
(-2.5)
A 		197.7
(-3)
A 		254.2
(3)
P 		57
avr 234.3
(-0.4) 		212.3
(-1.7) 		189.5
(-3) 		294.2
(3) 		105

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 321
1 2 3 4 5 6 range
A 485
(3)
P 		363.6
(-0.1)
P 		448.5
(2.1)
P 		346.3
(-0.6)
P 		375.5
(0.2)
P 		252.2
(-3)
P 		233
B 572.9
(3)
P 		421
(-0.4)
P 		392.7
(-1)
P 		305.4
(-3)
P 		369.2
(-1.6)
P 		306
(-3)
P 		268
C 527.6
(3)
P 		404.3
(0.3)
P 		253.3
(-3)
P 		319
(-1.6)
P 		293.3
(-2.1)
P 		324.4
(-1.4)
P 		274
avr 528.5
(3) 		396.3
(-0.4) 		364.8
(-1.2) 		323.6
(-2.2) 		346
(-1.7) 		294.2
(-3) 		234
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 81.5
(3)
P 		46.9
(-2.3)
A 		43.2
(-2.9)
A 		42.5
(-3)
P 		39
B 74.1
(3)
P 		54
(-1.6)
A 		47.6
(-3)
A 		72
(2.5)
P 		27
C 81.6
(3)
P 		58.1
(-0.6)
A 		68.9
(1)
A 		42.9
(-3)
P 		39
avr 79.1
(3) 		53
(-2.9) 		53.2
(-2.8) 		52.5
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 89.4
(-0.5)
P 		129.3
(3)
P 		97.7
(0.2)
P 		87.8
(-0.7)
P 		113.3
(1.6)
P 		61.4
(-3)
P 		68
B 199.3
(3)
P 		140.1
(-0)
P 		95.4
(-2.3)
P 		80.9
(-3)
P 		150
(0.5)
P 		114.1
(-1.3)
P 		118
C 195.5
(3)
P 		123.4
(-0.3)
P 		64.5
(-3)
P 		64.2
(-3)
P 		94.9
(-1.6)
P 		108.6
(-1)
P 		131
avr 161.4
(3) 		130.9
(0.8) 		85.9
(-2.4) 		77.6
(-3) 		119.4
(-0) 		94.7
(-1.8) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183802_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1174
Sequence Type Exemplar sequence
Representative Public ID T05E7.4 NCBI
Target Description T05E7.4 /REP_DB=WormBase Gene ID /WP=CE13237 /TR=O01859 /GB=AAB54216.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059384(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059384 NCBI Caenorhabditis elegans T05E7.4 (T05E7.4) mRNA, complete cds. 11/11 None
SNAP00000044425 ENSEMBL cdna:SNAP chromosome:CEL140:I:6200810:6202343:-1 11/11 None
GENEFINDER00000044435 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6200810:6203031:-1 11/11 None
T05E7.4 ENSEMBL cdna:known chromosome:CEL140:I:6200689:6202343:-1 gene:T05E7.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6200738-6202272(-) 96.06 100.0
Public Domain and Genome References
Gene Title
Ensembl T05E7.4
Entrez Gene 172307 Entrez gene
WormBase CE39031 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB54216 Hypothetical protein T05E7.4 [Caenorhabditis elegans] ref|NP_491785.2| T05E7.4 [Caenorhabditis elegans] 1.0E-96
blast CAE67134 Hypothetical protein CBG12556 [Caenorhabditis briggsae] 1.0E-89
blast CAE67134 Hypothetical protein CBG12556 [Caenorhabditis briggsae] 3.0E-77
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491785.2 4 2-24,34-56,68-90,119-141
T05E7.4 4 2-24,34-56,68-90,119-141
SNAP00000044425 4 2-24,34-56,68-90,119-141
GENEFINDER00000044435 4 21-43,53-75,88-110,139-161
Sequence
Target Sequence 
>C. ELEGANS:183802_AT
gatctaaccgcgttcgaagtttgcctagtcggtctgatgctattctttggattgacttgt
attatgttgataatcggagttcaaaagcatgctcatcaattgatatacccatctcttctg
gcacgaggacttacaactcttttccttgctgttttcggtgtctcaactgtgttctcctcg
acaagatcacctcatgctccagctgatatggaagcctggagacgagaaaagaatcacgca
aacgatgagccaaatatggctttgagattggtgctctttgtgtttgcaatgctctttttg
actgttattatcttttattgctcttatcttgttgtaagactgattcattacgagcaggct
tacgcaaggttgaaggagagaagaagctcgttgattcaagccggaatgatcgatccagat
ttcccgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTAACCGCGTTCGAAGTTTGCC 225 411 355 Antisense
GAAGTTTGCCTAGTCGGTCTGATGC 687 335 370 Antisense
CGGTCTGATGCTATTCTTTGGATTG 502 243 384 Antisense
CCATCTCTTCTGGCACGAGGACTTA 88 271 463 Antisense
GAGGACTTACAACTCTTTTCCTTGC 189 403 479 Antisense
CTGTTTTCGGTGTCTCAACTGTGTT 446 239 503 Antisense
TCACCTCATGCTCCAGCTGATATGG 701 625 541 Antisense
GGTGCTCTTTGTGTTTGCAATGCTC 206 501 624 Antisense
TGCAATGCTCTTTTTGACTGTTATT 230 577 639 Antisense
GAAGCTCGTTGATTCAAGCCGGAAT 353 343 737 Antisense
AATGATCGATCCAGATTTCCCGAGC 403 163 759 Antisense
Sequence Source Affymetrix Proprietary Database