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[183801_at]

Description T08G11.3 /REP_DB=WormBase Gene ID /WP=CE13447 /TR=Q94012 /GB=CAB02306.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 41      6grp_total > 21      4grp_total > 38      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 66.4
(3)
P 		31.6
(-2.8)
A 		30.4
(-3)
A 		58.3
(1.7)
A 		36
B 54.4
(3)
P 		45.1
(0.9)
A 		34.5
(-1.6)
P 		28.2
(-3)
P 		26
C 75.6
(3)
P 		43.4
(-1)
P 		27.5
(-3)
A 		41.8
(-1.2)
A 		48
avr 65.5
(3) 		40
(-1.4) 		30.8
(-3) 		42.8
(-0.9) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 56.5
(0.2)
A 		70.1
(1.7)
P 		81.4
(3)
P 		28.9
(-3)
A 		42.6
(-1.4)
A 		32.3
(-2.6)
A 		53
B 56.5
(-0.5)
P 		95.2
(3)
P 		70.2
(0.8)
P 		43.3
(-1.7)
A 		53.7
(-0.7)
P 		28.3
(-3)
A 		67
C 41.8
(-1.5)
P 		63.1
(3)
P 		59.4
(2.2)
P 		49
(0)
A 		34.7
(-3)
A 		44.9
(-0.8)
A 		28
avr 51.6
(-0.6) 		76.1
(3) 		70.3
(2.1) 		40.4
(-2.2) 		43.7
(-1.8) 		35.2
(-3) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 24.2
(3)
P 		6.9
(-3)
A 		7.9
(-2.7)
A 		8.5
(-2.4)
A 		17
B 17.4
(3)
P 		11.1
(-0.3)
A 		8
(-1.9)
P 		6
(-3)
P 		11
C 25
(3)
P 		12.5
(-1.2)
P 		9.6
(-2.1)
A 		7
(-3)
A 		18
avr 22.2
(3) 		10.2
(-1.8) 		8.5
(-2.5) 		7.2
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 10.4
(-1.9)
A 		24.9
(3)
P 		17.7
(0.5)
P 		7.3
(-3)
A 		12.8
(-1.1)
A 		7.9
(-2.8)
A 		18
B 19.7
(-0.4)
P 		31.7
(3)
P 		17
(-1.2)
P 		11.5
(-2.7)
A 		21.8
(0.2)
P 		10.5
(-3)
A 		21
C 15.5
(0.6)
P 		19.2
(3)
P 		15.1
(0.4)
P 		9.8
(-3)
A 		11.2
(-2.1)
A 		15
(0.3)
A 		9
avr 15.2
(-0.8) 		25.3
(3) 		16.6
(-0.3) 		9.5
(-3) 		15.3
(-0.8) 		11.1
(-2.4) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183801_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1042
Sequence Type Exemplar sequence
Representative Public ID T08G11.3 NCBI
Target Description T08G11.3 /REP_DB=WormBase Gene ID /WP=CE13447 /TR=Q94012 /GB=CAB02306.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060002(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060002 NCBI Caenorhabditis elegans T08G11.3 (T08G11.3) mRNA, complete cds. 11/11 None
SNAP00000035563 ENSEMBL cdna:SNAP chromosome:CEL140:I:8929472:8933210:1 11/11 None
GENEFINDER00000035566 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:8929472:8933210:1 11/11 None
T08G11.3 ENSEMBL cdna:known chromosome:CEL140:I:8929295:8933210:1 gene:T08G11.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8929225-8933141(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T08G11.3
Entrez Gene 188307 Entrez gene
SwissProt Q94012 EMBL-EBI
WormBase CE13447 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02306 Hypothetical protein T08G11.3 [Caenorhabditis elegans] ref|NP_492403.1| T08G11.3 [Caenorhabditis elegans] 0.0
blast CAE66994 Hypothetical protein CBG12392 [Caenorhabditis briggsae] 0.0
blast CAD57697 Hypothetical protein H03A11.2 [Caenorhabditis elegans] emb|CAB07529.2| Hypothetical protein H03A11.2 [Caenorhabditis elegans] ref|NP_510528.2| H03A11.2 [Caenorhabditis elegans] 3.0E-19
blast XP_545876 PREDICTED: similar to CG30069-PA [Canis familiaris] 7.0E-19
Sequence
Target Sequence 
>C. ELEGANS:183801_AT
tcttctggaccatttctagttttgtctactaatcgagcagattatgtcaaaaaacagggg
gatcgttcacttccaattcgaaacacaaatgacacttcaactcattcaataaatgctcca
ttcgaaggagagtctacaaatcacgcagattttcaacgaaaacaagcggaaaagtccaaa
ctgacacgtccccattcttcgtcgaatttattgtccccgaatgcctcaaagttcgatgca
acgacaacgacgcgcgccgattttattcagaaaccacacgtcagagtaataaacgtgaaa
ccaaaagatgattccttctctggacatgtttctcgtttcgatgcaaacacaacttaccac
gacgggtttcaagaaaaaagtgctgaaaaacttccaatgcaaagaacaaaagatgaactt
catgttggtgaaggaaaattctatggagaaactacgcagcacagtgatttcattgaaaaa
cacgtggatatttgtccagctgaaaaagttttgacaagaagagatcgatcatttgagttc
aaaagaactgcaaatggacacagatactacgaacaacgtgtcactcatggtacaatcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTTCTGGACCATTTCTAGTTTTGT 528 617 1189 Antisense
GGATCGTTCACTTCCAATTCGAAAC 588 507 1248 Antisense
GAAGGAGAGTCTACAAATCACGCAG 352 333 1312 Antisense
TTCTTCGTCGAATTTATTGTCCCCG 502 677 1383 Antisense
TGTCCCCGAATGCCTCAAAGTTCGA 653 555 1400 Antisense
GTTCGATGCAACGACAACGACGCGC 306 443 1419 Antisense
CGCGCGCCGATTTTATTCAGAAACC 283 257 1439 Antisense
AAGATGATTCCTTCTCTGGACATGT 401 155 1493 Antisense
CTCTGGACATGTTTCTCGTTTCGAT 309 231 1506 Antisense
GATGCAAACACAACTTACCACGACG 501 411 1528 Antisense
AACGTGTCACTCATGGTACAATCCA 599 143 1763 Antisense
Sequence Source Affymetrix Proprietary Database