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[183800_at]

Description C50E3.8 /REP_DB=WormBase Gene ID /WP=CE08901 /TR=Q22928 /GB=AAB04883.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 1.8
(-3)
A 		14.6
(-1)
A 		26.2
(0.9)
A 		39.7
(3)
A 		38
B 13.8
(3)
A 		12.8
(2.5)
A 		1.4
(-3)
A 		11.9
(2.1)
A 		12
C 18.6
(3)
A 		18.3
(2.9)
A 		3.3
(-3)
A 		7
(-1.5)
A 		15
avr 11.4
(-2.3) 		15.2
(0.2) 		10.3
(-3) 		19.5
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 9.2
(1.1)
A 		12.9
(3)
A 		4.8
(-1.2)
A 		1.6
(-2.9)
A 		10.2
(1.6)
A 		1.4
(-3)
A 		12
B 1.5
(-2.6)
A 		1
(-2.7)
A 		16.8
(3)
A 		2.2
(-2.3)
A 		3.1
(-2)
A 		0.3
(-3)
A 		17
C 8.2
(1.1)
A 		10.4
(2.3)
A 		4
(-1.3)
A 		3.2
(-1.8)
A 		11.6
(3)
A 		1
(-3)
A 		11
avr 6.3
(1.3) 		8.1
(2.7) 		8.5
(3) 		2.3
(-1.9) 		8.3
(2.8) 		0.9
(-3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.6
(-3)
A 		3.2
(-0.5)
A 		6.9
(3)
A 		5.8
(2)
A 		6
B 4.4
(3)
A 		3.2
(1.2)
A 		0.3
(-3)
A 		2.5
(0.2)
A 		4
C 6.1
(3)
A 		5.3
(2)
A 		1.1
(-3)
A 		1.2
(-2.9)
A 		5
avr 3.7
(1.9) 		3.9
(3) 		2.8
(-3) 		3.2
(-0.8) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.7
(-1)
A 		4.6
(3)
A 		1
(-2)
A 		0.4
(-2.9)
A 		3.1
(0.9)
A 		0.3
(-3)
A 		4
B 0.5
(-2.4)
A 		0.3
(-2.7)
A 		4.1
(3)
A 		0.6
(-2.3)
A 		1.3
(-1.2)
A 		0.1
(-3)
A 		4
C 3
(1.6)
A 		3.2
(2)
A 		1
(-1.8)
A 		0.6
(-2.5)
A 		3.8
(3)
A 		0.3
(-3)
A 		4
avr 1.7
(0.6) 		2.7
(3) 		2
(1.3) 		0.5
(-2.3) 		2.7
(3) 		0.2
(-3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183800_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11679
Sequence Type Exemplar sequence
Representative Public ID C50E3.8 NCBI
Target Description C50E3.8 /REP_DB=WormBase Gene ID /WP=CE08901 /TR=Q22928 /GB=AAB04883.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072560(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072560 NCBI Caenorhabditis elegans C50E3.8 (C50E3.8) mRNA, complete cds. 11/11 None
GENEFINDER00000028553 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7597345:7600961:-1 11/11 None
C50E3.8 ENSEMBL cdna:known chromosome:CEL140:V:7600621:7600961:-1 gene:C50E3.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028533 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7600621-7600962(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C50E3.8
Entrez Gene 183660 Entrez gene
SwissProt Q22928 EMBL-EBI
WormBase CE08901 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_504960 C50E3.7 [Caenorhabditis elegans] gb|AAB04882.1| Hypothetical protein C50E3.7 [Caenorhabditis elegans] 1.0E-128
blast CAA22112 Hypothetical protein Y75B8A.34 [Caenorhabditis elegans] ref|NP_499606.1| Y75B8A.34 [Caenorhabditis elegans] 4.0E-64
blast NP_504961 C50E3.8 [Caenorhabditis elegans] gb|AAB04883.1| Hypothetical protein C50E3.8 [Caenorhabditis elegans] 5.0E-49
blast CAE58058 Hypothetical protein CBG01137 [Caenorhabditis briggsae] 4.0E-45
blast NP_504960 C50E3.7 [Caenorhabditis elegans] gb|AAB04882.1| Hypothetical protein C50E3.7 [Caenorhabditis elegans] 5.0E-18
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504961.1 1 50-72
C50E3.8 1 50-72
GENEFINDER00000028553 7 50-72,93-115,139-161,173-195,218-240,261-279,294-316
Sequence
Target Sequence 
>C. ELEGANS:183800_AT
agcttctcattttatttcgaaggatctgatggtaagaatcaagaagtcaatattgataaa
ccatactgcccaagactgaaatgtgaagatgaagattacgtcaatgagctggcggtggct
ctcggaaactcaaagtccactggatttttgtctattgcagtttttgttcatctaactgta
aacgtatttaattttgcaacacagcttttcagtgccaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTTCTCATTTTATTTCGAAGGAT 510 77 16 Antisense
GATAAACCATACTGCCCAAGACTGA 113 421 70 Antisense
ATACTGCCCAAGACTGAAATGTGAA 540 23 78 Antisense
GAAGATTACGTCAATGAGCTGGCGG 34 339 106 Antisense
TCAATGAGCTGGCGGTGGCTCTCGG 411 633 116 Antisense
CGGAAACTCAAAGTCCACTGGATTT 434 241 138 Antisense
GTCCACTGGATTTTTGTCTATTGCA 244 477 150 Antisense
GTCTATTGCAGTTTTTGTTCATCTA 574 469 165 Antisense
TGTTCATCTAACTGTAAACGTATTT 667 557 180 Antisense
AACGTATTTAATTTTGCAACACAGC 552 143 196 Antisense
GCAACACAGCTTTTCAGTGCCAAAT 309 319 211 Antisense
Sequence Source Affymetrix Proprietary Database