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[183799_at]

Description K03H6.1 /REP_DB=WormBase Gene ID /WP=CE18011 /TR=O45173 /GB=AAC04417.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 13      4grp_total > 52      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 97.6
(1.2)
A 		126.1
(3)
P 		126.3
(3)
A 		32.3
(-3)
A 		94
B 95.5
(0.2)
P 		127.8
(3)
A 		57.9
(-3)
A 		59.6
(-2.9)
A 		70
C 130.5
(3)
A 		105.2
(0.9)
A 		71.8
(-1.8)
M 		57.4
(-3)
A 		73
avr 107.9
(2) 		119.7
(3) 		85.3
(0) 		49.8
(-3) 		70

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 99.7
(3)
A 		92.3
(2.3)
A 		64.2
(-0.4)
A 		92.5
(2.3)
A 		36.7
(-3)
A 		48.5
(-1.9)
A 		63
B 64.1
(0.7)
A 		61.6
(0.4)
A 		87.9
(3)
A 		29.5
(-2.7)
A 		57.1
(0)
A 		26.2
(-3)
A 		62
C 71.9
(2.7)
A 		75.4
(3)
A 		26.5
(-1.2)
A 		24.5
(-1.4)
A 		32.4
(-0.7)
A 		6.2
(-3)
A 		69
avr 78.6
(3) 		76.4
(2.7) 		59.5
(0.8) 		48.8
(-0.5) 		42.1
(-1.2) 		27
(-3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 35.5
(3)
A 		27.4
(1.4)
P 		33
(2.5)
A 		4.7
(-3)
A 		31
B 30.5
(2.7)
P 		31.6
(3)
A 		13.4
(-2.8)
A 		12.7
(-3)
A 		19
C 43.2
(3)
A 		30.2
(0.7)
A 		25
(-0.3)
M 		9.7
(-3)
A 		34
avr 36.4
(3) 		29.7
(1.5) 		23.8
(0.2) 		9
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 18.4
(-1)
A 		32.8
(3)
A 		14
(-2.2)
A 		23.5
(0.4)
A 		11.1
(-3)
A 		11.8
(-2.8)
A 		22
B 22.3
(2.6)
A 		20.5
(1.9)
A 		21.3
(2.3)
A 		7.8
(-3)
A 		23.2
(3)
A 		9.8
(-2.2)
A 		15
C 26.7
(3)
A 		23
(2.1)
A 		6.8
(-1.9)
A 		4.9
(-2.3)
A 		10.5
(-1)
A 		2.1
(-3)
A 		25
avr 22.5
(2) 		25.4
(3) 		14
(-0.9) 		12.1
(-1.6) 		14.9
(-0.6) 		7.9
(-3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183799_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10438
Sequence Type Exemplar sequence
Representative Public ID K03H6.1 NCBI
Target Description K03H6.1 /REP_DB=WormBase Gene ID /WP=CE18011 /TR=O45173 /GB=AAC04417.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067691(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067691 NCBI Caenorhabditis elegans K03H6.1 (K03H6.1) mRNA, complete cds. 11/11 None
SNAP00000035085 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1524172:1526620:1 11/11 None
GENEFINDER00000035094 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1523866:1526620:1 11/11 None
K03H6.1 ENSEMBL cdna:known chromosome:CEL140:IV:1523866:1526204:1 gene:K03H6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1523871-1526210(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K03H6.1
Entrez Gene 186962 Entrez gene
SwissProt O45173 EMBL-EBI
WormBase CE18011 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC04417 Hypothetical protein K03H6.1 [Caenorhabditis elegans] ref|NP_500092.1| K03H6.1 [Caenorhabditis elegans] 0.0
blast CAE67956 Hypothetical protein CBG13560 [Caenorhabditis briggsae] 1.0E-171
blast AAC04417 Hypothetical protein K03H6.1 [Caenorhabditis elegans] ref|NP_500092.1| K03H6.1 [Caenorhabditis elegans] 1.0E-165
blast CAE67956 Hypothetical protein CBG13560 [Caenorhabditis briggsae] 1.0E-141
blast CAE67957 Hypothetical protein CBG13561 [Caenorhabditis briggsae] 5.0E-47
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500092.1 7 36-58,71-93,113-135,156-178,227-249,278-300,315-337
K03H6.1 7 36-58,71-93,113-135,156-178,227-249,278-300,315-337
SNAP00000035085 5 27-49,70-92,141-163,192-214,229-251
GENEFINDER00000035094 7 36-58,71-93,113-135,156-178,227-249,278-300,315-337
Sequence
Target Sequence 
>C. ELEGANS:183799_AT
gtacacagcttctcgacttttgctactactctgggatgcggcaccagaaaacgtatcgga
acaaagactgggtgacgccaagcaatgtgaagaaggtctacctgaagttttccacgtttt
tgaacgcgattttggttgtattcgtcccaatagttttggtcatagttctgaatatgctta
tgattcggcagttgaagataaactggacatcaccaagattggagtcgatgagaggagcca
tgactaggagccacgtgcgtcaacgtcaacgagtagccgttacagtcatcgccatcgggc
tctgtttttctctaacccaaggaccatctgcattcatggctctttacgaacttttttccg
aatacgaactcgggcatactttctacgcgatttttagcataacgaattcgctggtggtca
ctggtaaaacgatcaactttattttgttctgcctgtcatcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACACAGCTTCTCGACTTTTGCTA 285 459 575 Antisense
GACTTTTGCTACTACTCTGGGATGC 175 373 589 Antisense
GAAGGTCTACCTGAAGTTTTCCACG 34 335 666 Antisense
GAGGAGCCATGACTAGGAGCCACGT 51 405 806 Antisense
GTGCGTCAACGTCAACGAGTAGCCG 130 473 829 Antisense
CGAGTAGCCGTTACAGTCATCGCCA 318 249 844 Antisense
TTCTCTAACCCAAGGACCATCTGCA 102 693 882 Antisense
CATCTGCATTCATGGCTCTTTACGA 410 211 899 Antisense
AACTCGGGCATACTTTCTACGCGAT 536 141 941 Antisense
TAACGAATTCGCTGGTGGTCACTGG 197 639 974 Antisense
TTATTTTGTTCTGCCTGTCATCGGA 591 679 1013 Antisense
Sequence Source Affymetrix Proprietary Database