[Home] | [Total List]

[183798_at]

Description Y51A2A.3 /REP_DB=WormBase Gene ID /WP=CE25359 /TR=Q9U270 /GB=CAB63377.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 101
1 2 3 4 range
A 45.7
(-0.7)
A 		6.4
(-3)
A 		69.1
(0.7)
A 		107.3
(3)
A 		101
B 58
(2.7)
A 		10
(-3)
A 		28.4
(-0.8)
A 		60.3
(3)
A 		50
C 18.8
(-2.3)
A 		8.6
(-3)
A 		9.4
(-2.9)
A 		92.1
(3)
A 		84
avr 40.8
(-0.5) 		8.3
(-3) 		35.6
(-0.9) 		86.6
(3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 63.6
(3)
A 		13.3
(-2.4)
A 		44.1
(0.9)
A 		11.2
(-2.6)
A 		7.6
(-3)
A 		8.2
(-2.9)
A 		56
B 6.7
(-3)
A 		25.1
(0.3)
A 		7.9
(-2.8)
A 		39.8
(3)
A 		24
(0.1)
A 		14
(-1.7)
A 		33
C 4.1
(-3)
A 		62.4
(3)
A 		6.6
(-2.7)
A 		22.7
(-1.1)
A 		28.2
(-0.5)
A 		31.6
(-0.2)
A 		58
avr 24.8
(-0.4) 		33.6
(3) 		19.5
(-2.4) 		24.6
(-0.4) 		19.9
(-2.2) 		17.9
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 16.6
(2.5)
A 		1.4
(-3)
A 		18.1
(3)
A 		15.7
(2.1)
A 		17
B 18.5
(3)
A 		2.5
(-3)
A 		6.6
(-1.5)
A 		12.9
(0.9)
A 		16
C 6.2
(-1.3)
A 		2.5
(-3)
A 		3.3
(-2.6)
A 		15.5
(3)
A 		13
avr 13.8
(2.6) 		2.1
(-3) 		9.3
(0.4) 		14.7
(3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 11.7
(3)
A 		4.7
(-1.3)
A 		9.6
(1.7)
A 		2.8
(-2.5)
A 		2.3
(-2.8)
A 		2
(-3)
A 		10
B 2.3
(-2.7)
A 		8.4
(1.5)
A 		1.9
(-3)
A 		10.5
(3)
A 		9.7
(2.4)
A 		5.2
(-0.7)
A 		9
C 1.5
(-3)
A 		19.1
(3)
A 		1.7
(-2.9)
A 		4.6
(-1.9)
A 		9.1
(-0.4)
A 		10.6
(0.1)
A 		18
avr 5.2
(-2.2) 		10.7
(3) 		4.4
(-3) 		6
(-1.5) 		7
(-0.5) 		5.9
(-1.6) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183798_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13562
Sequence Type Exemplar sequence
Representative Public ID Y51A2A.3 NCBI
Target Description Y51A2A.3 /REP_DB=WormBase Gene ID /WP=CE25359 /TR=Q9U270 /GB=CAB63377.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075178(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075178 NCBI Caenorhabditis elegans Y51A2A.3 (Y51A2A.3) mRNA, complete cds. 10/11 None
SNAP00000039467 ENSEMBL cdna:SNAP chromosome:CEL140:V:18292204:18293191:1 10/11 None
Y51A2A.3 ENSEMBL cdna:known chromosome:CEL140:V:18292132:18293191:1 gene:Y51A2A.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18292131-18293191(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y51A2A.3
Entrez Gene 190119 Entrez gene
SwissProt Q9U270 EMBL-EBI
WormBase CE30363 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB63377 Hypothetical protein Y51A2A.3 [Caenorhabditis elegans] ref|NP_507579.2| Y51A2A.3 [Caenorhabditis elegans] 3.0E-68
blast CAB63377 Hypothetical protein Y51A2A.3 [Caenorhabditis elegans] ref|NP_507579.2| Y51A2A.3 [Caenorhabditis elegans] 1.0E-59
blast CAA16303 Hypothetical protein Y17D7B.6 [Caenorhabditis elegans] ref|NP_507666.1| Y17D7B.6 [Caenorhabditis elegans] 1.0E-21
blast CAB04099 Hypothetical protein F11D11.8 [Caenorhabditis elegans] ref|NP_507658.1| F11D11.8 [Caenorhabditis elegans] 9.0E-21
blast CAA16303 Hypothetical protein Y17D7B.6 [Caenorhabditis elegans] ref|NP_507666.1| Y17D7B.6 [Caenorhabditis elegans] 4.0E-18
blast CAB04099 Hypothetical protein F11D11.8 [Caenorhabditis elegans] ref|NP_507658.1| F11D11.8 [Caenorhabditis elegans] 5.0E-17
Sequence
Target Sequence 
>C. ELEGANS:183798_AT
tcctcctaattccaaaatccacgtgtgatgtaaaaatgatggagctattcggcagagtta
ccactgctgctttatccatccctacttcatatggaactgtcgaagattgcattttaacat
gctacgccactcctgactgtcttttggcatattttagcccgaggtgctatcagtatgcca
catgtccagcttcttacaaaaatgtcaatttctccataatctctgaaacaggagatctac
actcttggaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTCCTAATTCCAAAATCCACGTG 368 593 50 Antisense
GGAGCTATTCGGCAGAGTTACCACT 383 519 90 Antisense
CAGAGTTACCACTGCTGCTTTATCC 290 205 102 Antisense
CTTTATCCATCCCTACTTCATATGG 285 223 119 Antisense
GCATTTTAACATGCTACGCCACTCC 492 307 158 Antisense
CCACTCCTGACTGTCTTTTGGCATA 665 273 176 Antisense
TTGGCATATTTTAGCCCGAGGTGCT 162 709 193 Antisense
GGTGCTATCAGTATGCCACATGTCC 26 501 212 Antisense
CCACATGTCCAGCTTCTTACAAAAA 514 275 227 Antisense
ATGTCAATTTCTCCATAATCTCTGA 709 47 251 Antisense
AACAGGAGATCTACACTCTTGGAAG 167 137 276 Antisense
Sequence Source Affymetrix Proprietary Database