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[183797_at]

Description C08F1.3 /REP_DB=WormBase Gene ID /WP=CE08018 /TR=O17178 /GB=AAK31403.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 67      4grp_total > 35      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 3.2
(-3)
A 		15.9
(-0.5)
A 		5.2
(-2.6)
A 		33.3
(3)
A 		30
B 4.3
(-3)
A 		24.2
(3)
A 		6.3
(-2.4)
A 		14.9
(0.2)
A 		20
C 3.5
(-3)
A 		34.8
(3)
A 		3.8
(-2.9)
A 		21.2
(0.4)
A 		31
avr 3.7
(-3) 		25
(3) 		5.1
(-2.6) 		23.1
(2.5) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 14.7
(-1.1)
A 		5.8
(-2.9)
A 		6.8
(-2.7)
A 		5.5
(-3)
A 		16.3
(-0.7)
A 		33.9
(3)
P 		28
B 3.8
(-3)
A 		4.6
(-2.8)
A 		27.6
(3)
A 		3.9
(-3)
A 		9.3
(-1.6)
A 		26.9
(2.8)
A 		24
C 1.6
(-3)
A 		7.2
(-2.1)
A 		4.6
(-2.5)
A 		5.9
(-2.3)
A 		4.5
(-2.5)
A 		39.7
(3)
A 		38
avr 6.7
(-2.7) 		5.9
(-2.8) 		13
(-1.3) 		5.1
(-3) 		10
(-2) 		33.5
(3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 1.1
(-3)
A 		3.5
(0.8)
A 		1.4
(-2.5)
A 		4.9
(3)
A 		4
B 1.4
(-3)
A 		6
(3)
A 		1.5
(-2.9)
A 		3.2
(-0.7)
A 		5
C 1.2
(-3)
A 		10
(3)
A 		1.3
(-2.9)
A 		3.6
(-1.4)
A 		9
avr 1.2
(-3) 		6.5
(3) 		1.4
(-2.8) 		3.9
(0.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.7
(-1.9)
A 		2.1
(-2.4)
A 		1.5
(-2.9)
A 		1.4
(-3)
A 		4.9
(0)
A 		8.3
(3)
P 		7
B 1.3
(-2.8)
A 		1.5
(-2.7)
A 		6.7
(0.8)
A 		1
(-3)
A 		3.8
(-1.1)
A 		10
(3)
A 		9
C 0.6
(-3)
A 		2.2
(-2.2)
A 		1.2
(-2.7)
A 		1.2
(-2.7)
A 		1.5
(-2.6)
A 		13.3
(3)
A 		13
avr 1.5
(-2.8) 		1.9
(-2.5) 		3.1
(-1.8) 		1.2
(-3) 		3.4
(-1.6) 		10.5
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183797_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5419
Sequence Type Exemplar sequence
Representative Public ID C08F1.3 NCBI
Target Description C08F1.3 /REP_DB=WormBase Gene ID /WP=CE08018 /TR=O17178 /GB=AAK31403.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061678(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061678 NCBI Caenorhabditis elegans C08F1.3 (C08F1.3) mRNA, complete cds. 11/11 None
SNAP00000012043 ENSEMBL cdna:SNAP chromosome:CEL140:II:1789184:1790192:1 11/11 None
GENEFINDER00000012062 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:1789184:1790192:1 11/11 None
C08F1.3 ENSEMBL cdna:known chromosome:CEL140:II:1789184:1790192:1 gene:C08F1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:1789182-1790191(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C08F1.3
Entrez Gene 182411 Entrez gene
SwissProt O17178 EMBL-EBI
WormBase CE08018 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31403 Hypothetical protein C08F1.3 [Caenorhabditis elegans] ref|NP_494079.1| C08F1.3 [Caenorhabditis elegans] 1.0E-175
blast AAC26314 Hypothetical protein T08E11.6 [Caenorhabditis elegans] ref|NP_494083.1| T08E11.6 [Caenorhabditis elegans] 3.0E-56
blast AAB66215 Hypothetical protein F45C12.5 [Caenorhabditis elegans] ref|NP_494058.1| F45C12.5 [Caenorhabditis elegans] 8.0E-53
Protein Domains
Database ID Description E-Value
Pfam IPR001810 EMBL-EBI Cyclin-like F-box 9.0E-6
Sequence
Target Sequence 
>C. ELEGANS:183797_AT
ggttgcgagtttccagattttttctcaatggattctacttgccagatattcaattatttg
gctcacttccaactgtggatagcatgttgttcggtctccaccttactcaaacaactaatt
atcaacgaattatgcttcaaaatcatatccagttcacagatcttcggagggatggagcac
gagctgatctgaacagtttgttagcgtcaaatgcatcatccatacaatttccaaacatga
tcttatcggatgctcaactcaatttgtttcttaaacattggatagccggatcgaatcaaa
gacttgacttccttaaaattttaaaaattcgaaacgtgacagtcgacgacgaagaggtga
ttttcaaaggaattgatcgtcaaccagcagtggacagaggagatcattattatcttcata
cacgtggtgtacagccaaagagtcctcgaaaattcgatatcacaagcagtgaaggggtcc
cggcgacgatttatttggacgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTTGCGAGTTTCCAGATTTTTTCT 577 505 425 Antisense
ATTTGGCTCACTTCCAACTGTGGAT 100 19 480 Antisense
GGATAGCATGTTGTTCGGTCTCCAC 241 511 501 Antisense
TCTCCACCTTACTCAAACAACTAAT 102 611 519 Antisense
TCATATCCAGTTCACAGATCTTCGG 197 621 567 Antisense
GGAGCACGAGCTGATCTGAACAGTT 126 521 598 Antisense
TGCATCATCCATACAATTTCCAAAC 297 579 636 Antisense
ATGATCTTATCGGATGCTCAACTCA 200 47 661 Antisense
GGTGTACAGCCAAAGAGTCCTCGAA 584 499 850 Antisense
CACAAGCAGTGAAGGGGTCCCGGCG 323 193 885 Antisense
CCCGGCGACGATTTATTTGGACGAG 142 259 903 Antisense
Sequence Source Affymetrix Proprietary Database