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[183796_s_at]

Description K01D12.2 /REP_DB=WormBase Gene ID /WP=CE06041 /TR=Q21093 /GB=CAA99870.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 09      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 1.4
(-3)
A 		1.7
(-2.8)
A 		10.7
(3)
A 		3.5
(-1.6)
A 		9
B 0.8
(-3)
A 		0.8
(-3)
A 		3.2
(-1.8)
A 		12.8
(3)
A 		12
C 0.5
(-3)
A 		10.6
(-1.5)
A 		0.3
(-3)
A 		41
(3)
A 		41
avr 0.9
(-3) 		4.4
(-1.8) 		4.7
(-1.7) 		19.1
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 25.2
(3)
A 		6.6
(-1.8)
A 		1.8
(-3)
A 		14
(0.1)
A 		3.1
(-2.7)
A 		8.3
(-1.3)
A 		23
B 1.5
(-2.6)
A 		0.7
(-3)
A 		12.6
(3)
A 		1.5
(-2.6)
A 		6.5
(-0.1)
A 		8.8
(1.1)
A 		12
C 3.9
(-2.3)
A 		1.6
(-2.9)
A 		1.3
(-2.9)
A 		27.6
(3)
A 		8.2
(-1.4)
A 		1
(-3)
A 		27
avr 10.2
(0.8) 		3
(-3) 		5.2
(-1.8) 		14.4
(3) 		5.9
(-1.5) 		6
(-1.4) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 0.5
(-2.8)
A 		0.4
(-3)
A 		2.8
(3)
A 		0.5
(-2.8)
A 		2
B 0.2
(-3)
A 		0.2
(-3)
A 		0.7
(-1.8)
A 		2.7
(3)
A 		3
C 0.2
(-2.9)
A 		3
(-0.4)
A 		0.1
(-3)
A 		6.9
(3)
A 		7
avr 0.3
(-3) 		1.2
(-1.3) 		1.2
(-1.3) 		3.4
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 4.6
(3)
A 		2.4
(-0.1)
A 		0.4
(-3)
A 		3.5
(1.4)
A 		0.9
(-2.3)
A 		2
(-0.7)
A 		4
B 0.5
(-2.4)
A 		0.2
(-3)
A 		3.1
(2.6)
A 		0.4
(-2.6)
A 		2.6
(1.6)
A 		3.3
(3)
A 		3
C 1.4
(-1.8)
A 		0.5
(-2.8)
A 		0.3
(-3)
A 		5.6
(3)
A 		2.7
(-0.3)
A 		0.3
(-3)
A 		5
avr 2.2
(0.3) 		1
(-3) 		1.3
(-2.2) 		3.2
(3) 		2.1
(0) 		1.9
(-0.5) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183796_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14502
Sequence Type Exemplar sequence
Representative Public ID K01D12.2 NCBI
Target Description K01D12.2 /REP_DB=WormBase Gene ID /WP=CE06041 /TR=Q21093 /GB=CAA99870.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073699(11), NM_060983(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073699 NCBI Caenorhabditis elegans K01D12.2 (K01D12.2) mRNA, complete cds. 11/11 None
NM_060983 NCBI Caenorhabditis elegans Y87G2A.12 (Y87G2A.12) mRNA, complete cds. 11/11 A 
SNAP00000019595 ENSEMBL cdna:SNAP chromosome:CEL140:I:13603174:13605549:1 11/11 None
GENEFINDER00000019613 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13603174:13605549:1 11/11 None
SNAP00000007085 ENSEMBL cdna:SNAP chromosome:CEL140:V:12384900:12385934:-1 11/11 None
GENEFINDER00000007112 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:12384900:12385934:-1 11/11 None
Y87G2A.12 ENSEMBL cdna:known chromosome:CEL140:I:13603174:13605549:1 gene:Y87G2A.12 11/11 A 
K01D12.2 ENSEMBL cdna:known chromosome:CEL140:V:12384143:12386541:-1 gene:K01D12.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008986 1/11 Cross Hyb Matching Probes None
GENEFINDER00000009985 1/11 Cross Hyb Matching Probes None
SNAP00000035997 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13603449-13605185(+) 74.03 92.01
chrV:12384899-12386541(-) 86.54 100.0
Public Domain and Genome References
Gene Title

Ensembl Y87G2A.12
K01D12.2
Entrez Gene 179697 Entrez gene
190779 Entrez gene
SwissProt Q21093 EMBL-EBI
Q9NA27 EMBL-EBI
WormBase CE06041 Wormbase
CE23141 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99870 Hypothetical protein K01D12.2 [Caenorhabditis elegans] ref|NP_506100.1| K01D12.2 [Caenorhabditis elegans] 0.0
blast CAB54495 Hypothetical protein Y87G2A.12 [Caenorhabditis elegans] ref|NP_493384.1| Y87G2A.12 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005312 EMBL-EBI Eukaryotic proteins of unknown function 3564 1.0E-126
Pfam IPR005312 EMBL-EBI Eukaryotic proteins of unknown function 3564 5.3E-17
Pfam IPR005312 EMBL-EBI Eukaryotic proteins of unknown function 3564 1.4E-63
Pfam IPR005312 EMBL-EBI Eukaryotic proteins of unknown function 3564 8.6E-37
Sequence
Target Sequence 
>C. ELEGANS:183796_S_AT
ggactagctgcacaacaattgcaaagtgaacagcttgatgaagaaaatccagcaatggtt
ttggaaaccactaacgaagacgagttcgaaattattcccatggaaactatcatcagcagc
aacgaaatcggaaatcaaattgacgtcgaggactcgcagcagttggattcaaaggatcag
tatcaaaaagtatcagaacttcaagatgattttatcgaaaccgtggaaacaaagtcaata
acgcgaatcaacaatgaaggattttctccagatgcaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACTAGCTGCACAACAATTGCAAA 463 523 1120 Antisense
ATTGCAAAGTGAACAGCTTGATGAA 374 5 1137 Antisense
GAAGAAAATCCAGCAATGGTTTTGG 207 337 1159 Antisense
GACGAGTTCGAAATTATTCCCATGG 358 377 1198 Antisense
ATTCCCATGGAAACTATCATCAGCA 407 9 1213 Antisense
ATCAAATTGACGTCGAGGACTCGCA 596 27 1253 Antisense
GAGGACTCGCAGCAGTTGGATTCAA 235 405 1267 Antisense
GACTCGCAGCAGTTGGATTCAAAGG 375 373 1270 Antisense
GATGATTTTATCGAAACCGTGGAAA 565 409 1324 Antisense
ATAACGCGAATCAACAATGAAGGAT 532 23 1357 Antisense
TGAAGGATTTTCTCCAGATGCAATG 395 575 1374 Antisense
Sequence Source Affymetrix Proprietary Database