[Home] | [Total List]

[183794_at]

Description ZK1225.1 /REP_DB=WormBase Gene ID /WP=CE19340 /TR=Q9XXL4 /GB=CAA18372.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 81      4grp_total > 33      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 40.3
(-3)
A 		94.2
(2.5)
A 		96.7
(2.7)
P 		99.4
(3)
A 		59
B 40.8
(-3)
A 		103.2
(3)
M 		64.1
(-0.8)
A 		56
(-1.5)
A 		62
C 41.6
(-3)
A 		63.2
(2.6)
A 		52
(-0.3)
A 		64.8
(3)
A 		23
avr 40.9
(-3) 		86.9
(3) 		70.9
(0.9) 		73.4
(1.2) 		46

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 83
1 2 3 4 5 6 range
A 20.5
(-2.6)
A 		24.2
(-2.3)
A 		49.2
(-0.3)
A 		90.9
(3)
A 		67.7
(1.2)
A 		15.6
(-3)
A 		75
B 44.2
(-1)
A 		51.5
(-0.1)
A 		32.8
(-2.4)
A 		75.9
(3)
A 		51.3
(-0.1)
A 		28.2
(-3)
A 		48
C 8.1
(-3)
A 		59
(1.2)
A 		44.7
(-0)
A 		81.6
(3)
A 		23.8
(-1.7)
A 		34.8
(-0.8)
A 		74
avr 24.3
(-3) 		44.9
(-0.9) 		42.2
(-1.2) 		82.8
(3) 		47.6
(-0.6) 		26.2
(-2.8) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 14.7
(-2.9)
A 		20.4
(0.3)
A 		25.3
(3)
P 		14.6
(-3)
A 		11
B 13
(-2.5)
A 		25.5
(3)
M 		14.9
(-1.7)
A 		11.9
(-3)
A 		14
C 13.8
(-0.6)
A 		18.2
(3)
A 		18.1
(2.9)
A 		10.9
(-3)
A 		7
avr 13.8
(-2.1) 		21.4
(3) 		19.4
(1.7) 		12.5
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 3.8
(-3)
A 		8.6
(-1.5)
A 		10.7
(-0.9)
A 		23.1
(3)
A 		20.4
(2.2)
A 		3.8
(-3)
A 		19
B 15.4
(0.5)
A 		17.1
(1.3)
A 		8
(-3)
A 		20.1
(2.7)
A 		20.8
(3)
A 		10.5
(-1.8)
A 		13
C 3
(-3)
A 		18
(3)
A 		11.4
(0.4)
A 		16.4
(2.4)
A 		7.7
(-1.1)
A 		11.6
(0.4)
A 		15
avr 7.4
(-3) 		14.6
(0.5) 		10
(-1.8) 		19.9
(3) 		16.3
(1.3) 		8.6
(-2.4) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183794_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2526
Sequence Type Exemplar sequence
Representative Public ID ZK1225.1 NCBI
Target Description ZK1225.1 /REP_DB=WormBase Gene ID /WP=CE19340 /TR=Q9XXL4 /GB=CAA18372.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060912(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060912 NCBI Caenorhabditis elegans ZK1225.1 (ZK1225.1) mRNA, complete cds. 11/11 None
GENEFINDER00000029395 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:13213441:13215878:1 11/11 None
SNAP00000029386 ENSEMBL cdna:SNAP chromosome:CEL140:I:13214373:13215721:1 10/11 None
ZK1225.1 ENSEMBL cdna:known chromosome:CEL140:I:13213783:13215878:1 gene:ZK1225.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13213713-13215809(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1225.1
Entrez Gene 191533 Entrez gene
SwissProt Q9XXL4 EMBL-EBI
WormBase CE19340 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA18372 Hypothetical protein ZK1225.1 [Caenorhabditis elegans] ref|NP_493313.1| ZK1225.1 [Caenorhabditis elegans] 0.0
blast CAA18372 Hypothetical protein ZK1225.1 [Caenorhabditis elegans] ref|NP_493313.1| ZK1225.1 [Caenorhabditis elegans] 1.0E-172
blast CAA18372 Hypothetical protein ZK1225.1 [Caenorhabditis elegans] ref|NP_493313.1| ZK1225.1 [Caenorhabditis elegans] 8.0E-85
blast NP_494666 C17A2.6 [Caenorhabditis elegans] pir||T31915 hypothetical protein C17A2.6 - Caenorhabditis elegans 1.0E-79
blast NP_494666 C17A2.6 [Caenorhabditis elegans] pir||T31915 hypothetical protein C17A2.6 - Caenorhabditis elegans 3.0E-79
blast CAB04380 Hypothetical protein F41D3.9 [Caenorhabditis elegans] ref|NP_493099.1| F41D3.9 [Caenorhabditis elegans] 4.0E-76
blast CAB04380 Hypothetical protein F41D3.9 [Caenorhabditis elegans] ref|NP_493099.1| F41D3.9 [Caenorhabditis elegans] 5.0E-76
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493313.1 1 12-34
ZK1225.1 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:183794_AT
ttgagccattttccggacaacgagaatttggaattccgacatttcgaagcgtcaagatat
cctgattttgtgagaaatgcattgacatacagcttcaagcctttgataatttcggaagtg
ttgaaagagtacccgatggtctggtggaacgatgctcacttttcgatggtagagcctacc
gtggttgagaccgtgctcaacgaagttggatcagggaaggtaccatcttcggttgtgcca
gttgttggcacagaccatagcaattttgctgtgttgcatccagaattactaaagtttttc
ccctcacactcgatccaattgcaactggagcagaggcaaatggcggccagcgtgatattt
gtgcaaagaacaaattattctgtaaagcttttgaaatggtgggtactgtgtgcgcttacc
gagaactgtatgagcccaccggatgctcgactgtcatgcaagttccactggaacaagttc
aaacggcatgccagttgctttaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGAGCCATTTTCCGGACAACGAGA 329 681 472 Antisense
GGAATTCCGACATTTCGAAGCGTCA 688 533 501 Antisense
GAGTACCCGATGGTCTGGTGGAACG 120 399 598 Antisense
GGTGGAACGATGCTCACTTTTCGAT 33 499 614 Antisense
AGCCTACCGTGGTTGAGACCGTGCT 266 83 644 Antisense
CCATCTTCGGTTGTGCCAGTTGTTG 430 269 694 Antisense
CTCACACTCGATCCAATTGCAACTG 257 227 774 Antisense
GGCGGCCAGCGTGATATTTGTGCAA 329 541 813 Antisense
TACTGTGTGCGCTTACCGAGAACTG 95 647 875 Antisense
CCGGATGCTCGACTGTCATGCAAGT 520 265 910 Antisense
CAAACGGCATGCCAGTTGCTTTAGA 362 191 951 Antisense
Sequence Source Affymetrix Proprietary Database