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[183793_at]

Description Y39B6A.B /REP_DB=WormBase Gene ID /WP=CE24230 /TR=Q9NEJ0 /GB=CAB61059.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 76      4grp_highest_8_8 > 36      4grp_high_8_8 > 56      6grp_highest_nonorm > 90      6grp_total > 76      4grp_total > 07      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 123
1 2 3 4 range
A 162.8
(3)
P 		134.9
(-2.2)
P 		130.8
(-2.9)
P 		130.5
(-3)
P 		32
B 171.7
(-0.2)
P 		117.6
(-3)
P 		232.4
(3)
P 		127.6
(-2.5)
P 		115
C 147.7
(0.8)
P 		111.1
(-2.9)
P 		109.7
(-3)
P 		170.2
(3)
P 		61
avr 160.7
(3) 		121.2
(-3) 		157.6
(2.5) 		142.8
(0.3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 141.9
(-3)
P 		198
(1)
P 		161.3
(-1.6)
P 		160.7
(-1.6)
P 		167.4
(-1.2)
P 		225.4
(3)
P 		84
B 160
(0.2)
P 		202.5
(3)
P 		110.2
(-3)
P 		179.3
(1.5)
P 		165.4
(0.6)
P 		172.4
(1)
P 		92
C 145.1
(-3)
P 		191.6
(-0.8)
P 		184.8
(-1.1)
P 		254.9
(2.2)
P 		163.8
(-2.1)
P 		272.7
(3)
P 		128
avr 149
(-3) 		197.4
(0.9) 		152.1
(-2.8) 		198.3
(1) 		165.5
(-1.7) 		223.5
(3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 59.3
(3)
P 		29.3
(-1.5)
P 		34.2
(-0.7)
P 		19.1
(-3)
P 		40
B 54.7
(3)
P 		29
(-2.6)
P 		53.8
(2.8)
P 		27.2
(-3)
P 		28
C 48.9
(3)
P 		32
(-2)
P 		38.2
(-0.2)
P 		28.7
(-3)
P 		20
avr 54.3
(3) 		30.1
(-2) 		42.1
(0.5) 		25
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 26.2
(-3)
P 		70.4
(3)
P 		35.1
(-1.8)
P 		40.8
(-1)
P 		50.5
(0.3)
P 		54.9
(0.9)
P 		44
B 55.7
(1.3)
P 		67.4
(3)
P 		26.8
(-3)
P 		47.5
(0.1)
P 		67.2
(3)
P 		64.3
(2.5)
P 		41
C 53.8
(-2.1)
P 		58.5
(-1.4)
P 		47
(-3)
P 		51.3
(-2.4)
P 		53
(-2.2)
P 		91.3
(3)
P 		44
avr 45.2
(-1.4) 		65.4
(2.2) 		36.3
(-3) 		46.5
(-1.2) 		56.9
(0.6) 		70.2
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183793_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19425
Sequence Type Exemplar sequence
Representative Public ID Y39B6A.B NCBI
Target Description Y39B6A.B /REP_DB=WormBase Gene ID /WP=CE24230 /TR=Q9NEJ0 /GB=CAB61059.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171562(11), NM_171563(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171562 NCBI Caenorhabditis elegans Y39B6A.43a (Y39B6A.43) mRNA, complete cds. 11/11 None
NM_171563 NCBI Caenorhabditis elegans Y39B6A.43b (Y39B6A.43) mRNA, complete cds. 11/11 None
GENEFINDER00000030694 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:18963674:18970360:-1 11/11 None
Y39B6A.43a ENSEMBL cdna:known chromosome:CEL140:V:18963674:18970396:-1 gene:Y39B6A.43 11/11 None
Y39B6A.43b ENSEMBL cdna:known chromosome:CEL140:V:18963674:18970360:-1 gene:Y39B6A.43 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030525 6/11 Cross Hyb Matching Probes None
SNAP00000030526 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18963673-18970360(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y39B6A.43
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD31833 Hypothetical protein Y39B6A.43a [Caenorhabditis elegans] ref|NP_741652.2| Y39B6A.43a [Caenorhabditis elegans] 0.0
blast CAD57708 Hypothetical protein Y39B6A.43b [Caenorhabditis elegans] ref|NP_741653.2| Y39B6A.43b [Caenorhabditis elegans] 0.0
blast CAE56192 Hypothetical protein CBG23815 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:183793_AT
cttcctgctggcatggattatgacgtgaaaatcgcctcgaaacgatatgagcacactcag
gtgcagaagaattttgttaggaaaatttatacggcgaaggggaagaattcggagagtttc
ccgggatcccctgagtacgctgtaattgtatactactggaaaggtgaaccaattcaattt
gagccagctttcaagcaaaatggagtacgaacagagtctaaggagtactcgagatatcaa
caaattgctgatgaggaacaagaatttgtggaggctactggttctatggatcctgtggta
gaaaatttgcagaaaaaccttgccccatcaccaccaccgctactaaaacgtgtcaccttc
ccaccggaaccccaacaatccacgtcatcaacatcggctgaaaaccttcacgagctgaaa
ttacagcttattcgacgagaaatgcaaaatcaggacagattttcggcggttttagaccgg
gccgacgggcttttggctagaatggagcagagattcggtgtggagcaccaccaccatatt
gtacatcagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCCTGCTGGCATGGATTATGACG 477 219 1570 Antisense
TATGACGTGAAAATCGCCTCGAAAC 362 651 1588 Antisense
ATCCCCTGAGTACGCTGTAATTGTA 123 39 1695 Antisense
GGCTACTGGTTCTATGGATCCTGTG 33 537 1842 Antisense
TTTGCAGAAAAACCTTGCCCCATCA 647 655 1875 Antisense
CACCACCACCGCTACTAAAACGTGT 96 203 1898 Antisense
GCTACTAAAACGTGTCACCTTCCCA 211 1 1908 Antisense
AACATCGGCTGAAAACCTTCACGAG 75 137 1959 Antisense
GGCCGACGGGCTTTTGGCTAGAATG 174 539 2049 Antisense
GAGATTCGGTGTGGAGCACCACCAC 259 397 2079 Antisense
ACCACCACCATATTGTACATCAGGA 36 87 2096 Antisense
Sequence Source Affymetrix Proprietary Database