[Home] | [Total List]

[183792_s_at]

Description F34D10.2 /REP_DB=WormBase Gene ID /WP=CE01570 /TR=Q17969 /GB=CAA85494.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 95      4grp_total > 17      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 49.8
(-2.2)
A 		43.4
(-3)
A 		62.8
(-0.4)
A 		88.9
(3)
A 		46
B 18.7
(-3)
A 		76.6
(3)
M 		68.5
(2.2)
A 		65
(1.8)
M 		58
C 65
(-1.2)
A 		49.6
(-2.2)
A 		38.9
(-3)
A 		124.1
(3)
P 		85
avr 44.5
(-3) 		56.5
(-1.5) 		56.7
(-1.5) 		92.7
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 72.7
(3)
A 		37.5
(-2.2)
A 		31.7
(-3)
A 		57.3
(0.7)
A 		50
(-0.3)
A 		70.3
(2.6)
P 		41
B 39.9
(-0.6)
A 		3.9
(-3)
A 		53.9
(0.3)
A 		45.2
(-0.3)
A 		80.9
(2.1)
P 		94.8
(3)
P 		91
C 48.3
(-0.1)
A 		10.6
(-3)
A 		64.5
(1.2)
A 		88.1
(3)
A 		88.5
(3)
M 		88.4
(3)
P 		78
avr 53.6
(0.2) 		17.3
(-3) 		50
(-0.1) 		63.5
(1.1) 		73.1
(2) 		84.5
(3) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 18.1
(3)
A 		9.4
(-3)
A 		16.4
(1.8)
A 		13
(-0.5)
A 		9
B 6
(-3)
A 		18.9
(3)
M 		15.9
(1.6)
A 		13.9
(0.7)
M 		13
C 21.5
(3)
A 		14.3
(-2.4)
A 		13.5
(-3)
A 		20.9
(2.6)
P 		8
avr 15.2
(0.5) 		14.2
(-3) 		15.3
(0.9) 		15.9
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 13.4
(0.8)
A 		13.3
(0.8)
A 		6.9
(-3)
A 		14.5
(1.5)
A 		15.1
(1.8)
A 		17.1
(3)
P 		10
B 13.9
(-0.8)
A 		1.3
(-3)
A 		13.1
(-0.9)
A 		12
(-1.1)
A 		32.9
(2.6)
P 		35.3
(3)
P 		34
C 17.9
(0.3)
A 		3.2
(-3)
A 		16.4
(-0)
A 		17.7
(0.3)
A 		28.6
(2.8)
M 		29.6
(3)
P 		26
avr 15.1
(-0.4) 		5.9
(-3) 		12.1
(-1.3) 		14.7
(-0.5) 		25.5
(2.5) 		27.3
(3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183792_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7015
Sequence Type Exemplar sequence
Representative Public ID F34D10.2 NCBI
Target Description F34D10.2 /REP_DB=WormBase Gene ID /WP=CE01570 /TR=Q17969 /GB=CAA85494.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065355(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065355 NCBI Caenorhabditis elegans F34D10.2 (F34D10.2) mRNA, complete cds. 11/11 None
F34D10.2.1 ENSEMBL cdna:known chromosome:CEL140:III:3726877:3735020:-1 gene:F34D10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:3726876-3735017(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F34D10.2
Entrez Gene 175481 Entrez gene
SwissProt Q17969 EMBL-EBI
WormBase CE01570 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257813_AT cell division control protein-related at
CANINE_2:CFAAFFX.22478.1.S1_S_AT similar to CDC45-like cfa
DROSOPHILA_2:1632288_AT dm
DROSGENOME1:154744_AT dm
CHICKEN:GGA.6008.1.S1_AT CDC45 cell division cycle 45-like (S. cerevisiae) gga
HG-FOCUS:204126_S_AT CDC45 cell division cycle 45-like (S. cerevisiae) hs
HG-U133A:204126_S_AT CDC45 cell division cycle 45-like (S. cerevisiae) hs
HG-U133_PLUS_2:204126_S_AT CDC45 cell division cycle 45-like (S. cerevisiae) hs
HG-U133A_2:204126_S_AT CDC45 cell division cycle 45-like (S. cerevisiae) hs
U133_X3P:G4502712_3P_S_AT CDC45 cell division cycle 45-like (S. cerevisiae) hs
HG-U95AV2:37458_AT CDC45 cell division cycle 45-like (S. cerevisiae) hs
MU11KSUBA:AA407116_RC_S_AT cell division cycle 45 homolog (S. cerevisiae)-like mm
MU11KSUBA:AA407174_S_AT cell division cycle 45 homolog (S. cerevisiae)-like mm
MG-U74AV2:102403_AT cell division cycle 45 homolog (S. cerevisiae)-like mm
MOE430A:1416575_AT cell division cycle 45 homolog (S. cerevisiae)-like mm
MOUSE430A_2:1416575_AT cell division cycle 45 homolog (S. cerevisiae)-like mm
MOUSE430_2:1416575_AT cell division cycle 45 homolog (S. cerevisiae)-like mm
MOE430B:1457838_AT cell division cycle 45 homolog (S. cerevisiae)-like mm
MOUSE430_2:1457838_AT cell division cycle 45 homolog (S. cerevisiae)-like mm
MG-U74CV2:171199_R_AT Cell division cycle 45 homolog (S. cerevisiae)-like, mRNA (cDNA clone MGC:41179 IMAGE:1262927) mm
RG-U34B:RC_AI044826_AT similar to CDC45L rn
RG-U34C:RC_AI179539_AT similar to CDC45L rn
RAE230B:1379235_X_AT similar to CDC45L rn
RAT230_2:1379235_X_AT similar to CDC45L rn
RAE230B:1379234_A_AT similar to CDC45L rn
RAT230_2:1379234_A_AT similar to CDC45L rn
RAE230B:1384108_AT similar to CDC45L rn
RAT230_2:1384108_AT similar to CDC45L rn
RAE230B:1384338_AT similar to CDC45L rn
RAT230_2:1384338_AT similar to CDC45L rn
YEAST_2:1771269_AT DNA replication initiation factor; recruited to MCM pre-RC complexes at replication origins; promotes release of MCM from Mcm10p, recruits elongation machinery; mutants in human homolog may cause velocardiofacial and DiGeorge syndromes Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
74 regulation of progression through cell cycle inferred from electronic annotation QuickGO AmiGO
6270 DNA replication initiation inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA85494 Hypothetical protein F34D10.2 [Caenorhabditis elegans] emb|CAA84320.1| Hypothetical protein F34D10.2 [Caenorhabditis elegans] ref|NP_497756.1| F34D10.2 [Caenorhabditis elegans] 0.0
blast CAE64489 Hypothetical protein CBG09214 [Caenorhabditis briggsae] 0.0
blast AAY41172 DNA replication protein Cdc45 [Cricetulus griseus] 4.0E-51
Protein Domains
Database ID Description E-Value
Pfam IPR003874 EMBL-EBI CDC45-like protein 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_497756.1 1 21-43
F34D10.2.1 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:183792_S_AT
tgagcccgtgtttgccacaaacgttatgggaatgattaatcgaaaagatggcacattttc
agttgaacaactggataattctgcattatcaatttgtgagcctctcatagtgacttcaat
tgtgaatatgagagcaaaacgtggaaatgtttggatgaccttctcggttagagatgttga
aaagctgaacactttgtattggagatttaagcatttttatgttggagttatgctgagatt
aatggttattggatttcaaggaagtatgtacttgtggagattcgacaatgggttcacatt
ccactgtctcacaagattttttatgtttctacacggaccaacaatgatccctatctattc
tccgcaaaaacaatttcatttgtgttatcttgatatcaatcgtcgtcgattcttccgata
tgagcattcggctcgagttctgaaaagcaagatggatcctaacgaaacggagtttgcaat
gggatttgatgtagattctgatggtggagctcttgtacttgatcatcccactgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGCCCGTGTTTGCCACAAACGTT 297 567 2388 Antisense
GTGAGCCTCTCATAGTGACTTCAAT 322 483 2483 Antisense
AAATGTTTGGATGACCTTCTCGGTT 509 113 2532 Antisense
GACAATGGGTTCACATTCCACTGTC 245 361 2671 Antisense
CACATTCCACTGTCTCACAAGATTT 303 197 2682 Antisense
CACGGACCAACAATGATCCCTATCT 538 197 2719 Antisense
CCCTATCTATTCTCCGCAAAAACAA 510 257 2736 Antisense
AATCGTCGTCGATTCTTCCGATATG 349 167 2785 Antisense
GAGCATTCGGCTCGAGTTCTGAAAA 438 387 2809 Antisense
GATTCTGATGGTGGAGCTCTTGTAC 545 431 2881 Antisense
TCTTGTACTTGATCATCCCACTGAA 350 619 2898 Antisense
Sequence Source Affymetrix Proprietary Database