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[183791_at] 7TM chemoreceptor, srt family

Description F47D2.4 /REP_DB=WormBase Gene ID /WP=CE10692 /TR=Q22982 /GB=AAG24112.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 29      6grp_cgc > 88      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 16.8
(3)
A 		6.6
(-3)
A 		13.6
(1.1)
A 		12.7
(0.6)
A 		10
B 34.5
(1.9)
A 		40.4
(3)
A 		7.5
(-3)
A 		26.8
(0.5)
A 		33
C 36.4
(1.1)
A 		25.7
(-0.6)
A 		11.3
(-3)
A 		48
(3)
A 		37
avr 29.2
(3) 		24.2
(1.4) 		10.8
(-3) 		29.2
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 3.4
(-3)
A 		6.2
(-2.6)
A 		15
(-1.3)
A 		5.5
(-2.7)
A 		45.3
(3)
A 		35.2
(1.6)
A 		42
B 6.5
(-2.2)
A 		3
(-2.8)
A 		2.1
(-3)
A 		33
(2.2)
A 		37.7
(3)
A 		2
(-3)
A 		36
C 28.7
(3)
A 		5.6
(-2.1)
A 		5.6
(-2.1)
A 		23.6
(1.9)
A 		1.6
(-3)
A 		18.7
(0.8)
A 		27
avr 12.9
(-0.9) 		4.9
(-3) 		7.6
(-2.3) 		20.7
(1.1) 		28.2
(3) 		18.6
(0.5) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 6.1
(3)
A 		1.4
(-3)
A 		3.6
(-0.2)
A 		1.9
(-2.4)
A 		5
B 11
(3)
A 		10
(2.4)
A 		1.7
(-3)
A 		5.7
(-0.4)
A 		9
C 12
(3)
A 		7.4
(-0.4)
A 		3.9
(-3)
A 		8.1
(0.1)
A 		8
avr 9.7
(3) 		6.3
(-0.1) 		3.1
(-3) 		5.2
(-1.1) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 0.6
(-3)
A 		2.2
(-2.3)
A 		3.3
(-1.8)
A 		1.4
(-2.6)
A 		13.7
(3)
A 		8.6
(0.7)
A 		13
B 2.3
(-2.3)
A 		1
(-2.8)
A 		0.5
(-3)
A 		8.7
(0.3)
A 		15.3
(3)
A 		0.7
(-2.9)
A 		15
C 10.6
(3)
A 		1.7
(-2.3)
A 		1.4
(-2.5)
A 		4.7
(-0.5)
A 		0.5
(-3)
A 		6.2
(0.4)
A 		10
avr 4.5
(-0.9) 		1.6
(-3) 		1.7
(-2.9) 		4.9
(-0.6) 		9.8
(3) 		5.2
(-0.4) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183791_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15222
Sequence Type Exemplar sequence
Representative Public ID F47D2.4 NCBI
Target Description F47D2.4 /REP_DB=WormBase Gene ID /WP=CE10692 /TR=Q22982 /GB=AAG24112.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071775(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071775 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-35) (srt-35) mRNA, complete cds. 11/11 None
SNAP00000032762 ENSEMBL cdna:SNAP chromosome:CEL140:V:4261299:4262933:-1 11/11 None
GENEFINDER00000032780 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:4261022:4271172:-1 9/11 None
F47D2.4 ENSEMBL cdna:known chromosome:CEL140:V:4261299:4264430:-1 gene:F47D2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:4261298-4264430(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-35
Ensembl F47D2.4
Entrez Gene 185925 Entrez gene
SwissProt Q22982 EMBL-EBI
WormBase CE10692 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG24112 Serpentine receptor, class t protein 35 [Caenorhabditis elegans] ref|NP_504176.1| Serpentine Receptor, class T family member (srt-35) [Caenorhabditis elegans] 0.0
blast AAG24112 Serpentine receptor, class t protein 35 [Caenorhabditis elegans] ref|NP_504176.1| Serpentine Receptor, class T family member (srt-35) [Caenorhabditis elegans] 1.0E-166
blast AAG24114 Serpentine receptor, class t protein 36 [Caenorhabditis elegans] ref|NP_504177.1| Serpentine Receptor, class T family member (srt-36) [Caenorhabditis elegans] 1.0E-154
blast AAG24116 Serpentine receptor, class t protein 37 [Caenorhabditis elegans] ref|NP_504181.2| Serpentine Receptor, class T family member (srt-37) [Caenorhabditis elegans] 1.0E-154
blast AAG24112 Serpentine receptor, class t protein 35 [Caenorhabditis elegans] ref|NP_504176.1| Serpentine Receptor, class T family member (srt-35) [Caenorhabditis elegans] 1.0E-141
blast AAG24114 Serpentine receptor, class t protein 36 [Caenorhabditis elegans] ref|NP_504177.1| Serpentine Receptor, class T family member (srt-36) [Caenorhabditis elegans] 1.0E-121
blast AAG24116 Serpentine receptor, class t protein 37 [Caenorhabditis elegans] ref|NP_504181.2| Serpentine Receptor, class T family member (srt-37) [Caenorhabditis elegans] 1.0E-121
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 6.4E-104
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.8E-108
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 3.8E-121
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504176.1 7 36-53,74-96,109-131,152-174,197-219,240-262,272-294
F47D2.4 7 36-53,74-96,109-131,152-174,197-219,240-262,272-294
SNAP00000032762 6 5-27,37-59,80-102,125-147,168-190,200-222
GENEFINDER00000032780 18 37-59,72-94,109-131,152-174,200-222,243-265,311-333,346-368,383-405,426-448,474-496,516-538,607-624,645-667,680-702,723-745,768-790,811-833
Sequence
Target Sequence 
>C. ELEGANS:183791_AT
gacaccagccttattgtgttgttctgtaatttacggaagttatttcctgttcacaacacc
acatgtctacaattcgaaacatcttgcgtggttctacgatccgatgatttttcctggtag
agccaaggaatacgataatatttatcatggcgttaataacttttctatcgttgctatcac
atgtgcactctatattccattttacaaaattgttcgaggaaatctgaaaatctcaggcag
taactcaaggtttcataacgctaaactacaaatctatctgcaatcagtattaatatgtgt
cgcgagtcaagcagctgcgatcatctacgtggtcatgaatttcgtccaagttcctccgat
tgtcgtcgtctctggtcatctactctgggaattggtacatggagctccagtgttcatata
catttcattcaatgatatgatccgaaaacgatttctggagatattcggttgcaaaaatgt
ggtgacaccgcaatttgttgtaagccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACCAGCCTTATTGTGTTGTTCT 78 369 465 Antisense
CTGTTCACAACACCACATGTCTACA 562 239 511 Antisense
ACATCTTGCGTGGTTCTACGATCCG 642 105 543 Antisense
ACTTTTCTATCGTTGCTATCACATG 247 103 623 Antisense
GTGCACTCTATATTCCATTTTACAA 244 481 647 Antisense
TATGTGTCGCGAGTCAAGCAGCTGC 392 655 758 Antisense
TCAAGCAGCTGCGATCATCTACGTG 178 631 771 Antisense
TCATGAATTTCGTCCAAGTTCCTCC 71 623 797 Antisense
TCTCTGGTCATCTACTCTGGGAATT 380 611 833 Antisense
GGAGCTCCAGTGTTCATATACATTT 646 521 865 Antisense
GACACCGCAATTTGTTGTAAGCCCT 631 349 948 Antisense
Sequence Source Affymetrix Proprietary Database