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[183790_s_at]

Description F42G10.1 /REP_DB=WormBase Gene ID /WP=CE01581 /TR=Q09393 /GB=CAA88262.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 81      4grp_high_8_8 > 54      6grp_total > 82      4grp_total > 57      6grp_high1_sub > 04      6grp_rule_based > S4      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 347
1 2 3 4 range
A 90.1
(-1.8)
P 		315.1
(2.3)
P 		355.9
(3)
P 		26.1
(-3)
A 		330
B 130
(-0.4)
P 		213
(1.5)
P 		281.5
(3)
P 		11.6
(-3)
A 		270
C 120.1
(-2)
A 		305.2
(1.9)
P 		358.5
(3)
P 		73.9
(-3)
P 		285
avr 113.4
(-1.4) 		277.8
(1.9) 		332
(3) 		37.2
(-3) 		295

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 563
1 2 3 4 5 6 range
A 161.4
(-3)
A 		326.6
(-1)
P 		519.4
(1.4)
P 		618
(2.6)
P 		647.2
(3)
P 		185.9
(-2.7)
P 		486
B 138.6
(-3)
P 		367.3
(-0.3)
P 		531.1
(1.6)
P 		540.6
(1.7)
P 		653.9
(3)
P 		203.7
(-2.2)
P 		515
C 125.4
(-3)
P 		344.6
(-0.7)
P 		393.8
(-0.1)
P 		688.6
(3)
P 		527.4
(1.3)
P 		272.1
(-1.4)
P 		563
avr 141.8
(-3) 		346.2
(-0.4) 		481.4
(1.3) 		615.7
(3) 		609.5
(2.9) 		220.6
(-2) 		474
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 32.8
(-1)
P 		68.4
(1.3)
P 		93
(3)
P 		3.8
(-3)
A 		89
B 41.5
(0.7)
P 		52.6
(1.8)
P 		65.2
(3)
P 		2.5
(-3)
A 		63
C 39.8
(-1.5)
A 		87.7
(1)
P 		124.9
(3)
P 		12.5
(-3)
P 		112
avr 38
(-0.8) 		69.6
(1.3) 		94.4
(3) 		6.3
(-3) 		88

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 236
1 2 3 4 5 6 range
A 29.7
(-3)
A 		116.2
(0.1)
P 		113.1
(0)
P 		156.7
(1.6)
P 		195.3
(3)
P 		45.3
(-2.4)
P 		166
B 48.2
(-3)
P 		122.3
(-1)
P 		129
(-0.8)
P 		143.2
(-0.4)
P 		265.7
(3)
P 		76
(-2.2)
P 		218
C 46.5
(-3)
P 		105.2
(-0.2)
P 		100.2
(-0.4)
P 		138.5
(1.4)
P 		170.6
(3)
P 		91.1
(-0.8)
P 		124
avr 41.5
(-3) 		114.6
(-0.4) 		114.1
(-0.4) 		146.1
(0.7) 		210.5
(3) 		70.8
(-2) 		169
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 183790_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17169
Sequence Type Exemplar sequence
Representative Public ID F42G10.1 NCBI
Target Description F42G10.1 /REP_DB=WormBase Gene ID /WP=CE01581 /TR=Q09393 /GB=CAA88262.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077280(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077280 NCBI Caenorhabditis elegans F42G10.1 (F42G10.1) mRNA, complete cds. 11/11 None
GENEFINDER00000038231 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:10018149:10021409:-1 11/11 None
SNAP00000038226 ENSEMBL cdna:SNAP chromosome:CEL140:X:10018466:10020273:-1 9/11 None
F42G10.1.1 ENSEMBL cdna:known chromosome:CEL140:X:10018088:10021900:-1 gene:F42G10.1 11/11 None
F42G10.1.2 ENSEMBL cdna:known chromosome:CEL140:X:10018116:10022234:-1 gene:F42G10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10018157-10021835(-) 98.85 100.0
Public Domain and Genome References
Gene Title
Ensembl F42G10.1
Entrez Gene 181214 Entrez gene
SwissProt Q09393 EMBL-EBI
WormBase CE31513 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4245 neprilysin activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA88262 Hypothetical protein F42G10.1 [Caenorhabditis elegans] ref|NP_509681.2| F42G10.1 [Caenorhabditis elegans] 0.0
blast CAE58751 Hypothetical protein CBG01942 [Caenorhabditis briggsae] 1.0E-177
blast CAE58751 Hypothetical protein CBG01942 [Caenorhabditis briggsae] 1.0E-176
blast CAE58751 Hypothetical protein CBG01942 [Caenorhabditis briggsae] 1.0E-125
Protein Domains
Database ID Description E-Value
Pfam IPR000718 EMBL-EBI Peptidase M13, neprilysin 1.8E-72
Pfam IPR000718 EMBL-EBI Peptidase M13, neprilysin 1.8E-72
Pfam IPR000718 EMBL-EBI Peptidase M13, neprilysin 1.8E-72
Sequence
Target Sequence 
>C. ELEGANS:183790_S_AT
ggaacggtcagtggcacggttttgtacaaagaacagagagaatcttcatcacaatccact
tgatgtttcgataaatgtagccgcttctgaaatgccaacattcaattctttatacaactg
taaacctggggatcggatgtatgttgcaccagaaaattattgcaaaactttgaatatgga
cattgacgttgaggagtacaagtcacaaaaaattgaaaacgacgacctgtttgtactgac
tcattttatggatgttctcgaagataccgccgtcgaattagatgctgcaaacattacaac
atttgagggaaaactttttgatatcactgtggaagaagtcgaagaacaagaagaatctaa
agaaggtagtgcagagagttcatcatcatcatcgtcggagagtgatgaagaatcaagtgt
tgaaagagaattggatgaggtttctgatggacttgatgattcagaaaatgaaactgaact
gcgaaagtcagagattgcatctactagcagatcttcattcatttggcctgcaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAACGGTCAGTGGCACGGTTTTGT 434 511 1263 Antisense
GTTTCGATAAATGTAGCCGCTTCTG 165 451 1327 Antisense
GTAGCCGCTTCTGAAATGCCAACAT 315 457 1339 Antisense
GGGGATCGGATGTATGTTGCACCAG 98 499 1390 Antisense
ACGACCTGTTTGTACTGACTCATTT 117 93 1484 Antisense
TGGATGTTCTCGAAGATACCGCCGT 165 551 1511 Antisense
ACCGCCGTCGAATTAGATGCTGCAA 693 87 1528 Antisense
GTAGTGCAGAGAGTTCATCATCATC 373 455 1628 Antisense
GGATGAGGTTTCTGATGGACTTGAT 231 513 1695 Antisense
GATTGCATCTACTAGCAGATCTTCA 596 433 1755 Antisense
ATCTTCATTCATTTGGCCTGCAACA 464 31 1773 Antisense
Sequence Source Affymetrix Proprietary Database