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[183788_at]

Description Y94A7B.3 /REP_DB=WormBase Gene ID /WP=CE19281 /TR=Q9XXB1 /GB=CAA19565.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 35      6grp_cgc > 91      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 5.7
(-3)
A 		8.3
(1.1)
A 		5.9
(-2.7)
A 		9.5
(3)
A 		4
B 24.6
(0.3)
A 		41.2
(3)
A 		3.8
(-3)
A 		14.9
(-1.2)
A 		37
C 5.6
(-2.8)
A 		43.7
(3)
A 		4.3
(-3)
A 		40.9
(2.6)
A 		39
avr 12
(-1.3) 		31.1
(3) 		4.7
(-3) 		21.8
(0.9) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 16.1
(0.2)
A 		3.6
(-3)
A 		24.5
(2.3)
A 		27.1
(3)
A 		4.1
(-2.9)
A 		4.5
(-2.8)
A 		24
B 18.9
(-0.7)
A 		4.9
(-2.8)
A 		44.1
(3)
A 		16.2
(-1.1)
A 		3.6
(-3)
A 		14.9
(-1.3)
A 		41
C 18.1
(3)
A 		16.5
(2.3)
A 		7.4
(-1.6)
A 		4.1
(-3)
A 		9.4
(-0.7)
A 		5
(-2.6)
A 		14
avr 17.7
(0.7) 		8.3
(-2.2) 		25.3
(3) 		15.8
(0.1) 		5.7
(-3) 		8.1
(-2.3) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 2.1
(3)
A 		1.8
(0.4)
A 		1.5
(-2.1)
A 		1.4
(-3)
A 		1
B 7.8
(1.5)
A 		10.2
(3)
A 		0.9
(-3)
A 		3.2
(-1.5)
A 		9
C 1.9
(-2.8)
A 		12.6
(3)
A 		1.5
(-3)
A 		6.9
(-0.1)
A 		11
avr 3.9
(-0.7) 		8.2
(3) 		1.3
(-3) 		3.8
(-0.8) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 3
(-1)
A 		1.3
(-2.8)
A 		5.3
(1.3)
A 		6.9
(3)
A 		1.2
(-2.9)
A 		1.1
(-3)
A 		6
B 6.6
(0.3)
A 		1.6
(-2.9)
A 		10.7
(3)
A 		4.3
(-1.2)
A 		1.5
(-3)
A 		5.6
(-0.3)
A 		9
C 6.7
(3)
A 		5
(1.3)
A 		1.9
(-1.9)
A 		0.8
(-3)
A 		3
(-0.8)
A 		1.7
(-2.1)
A 		6
avr 5.4
(2.1) 		2.6
(-2) 		6
(3) 		4
(0.1) 		1.9
(-3) 		2.8
(-1.7) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183788_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13106
Sequence Type Exemplar sequence
Representative Public ID Y94A7B.3 NCBI
Target Description Y94A7B.3 /REP_DB=WormBase Gene ID /WP=CE19281 /TR=Q9XXB1 /GB=CAA19565.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075094(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075094 NCBI Caenorhabditis elegans Serpentine Receptor, class H family member (srh-291) (srh-291) mRNA, complete cds. 11/11 None
SNAP00000042693 ENSEMBL cdna:SNAP chromosome:CEL140:V:17810226:17815907:1 10/11 None
GENEFINDER00000042702 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:17810497:17815554:1 11/11 None
Y94A7B.3 ENSEMBL cdna:known chromosome:CEL140:V:17808062:17811187:1 gene:Y94A7B.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:17808061-17811187(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srh-291
Ensembl Y94A7B.3
Entrez Gene 190792 Entrez gene
SwissProt Q9XXB1 EMBL-EBI
WormBase CE34440 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4930 G-protein coupled receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA19565 Hypothetical protein Y94A7B.3 [Caenorhabditis elegans] ref|NP_507495.2| Serpentine Receptor, class H family member (srh-291) [Caenorhabditis elegans] 1.0E-174
blast CAA19566 Hypothetical protein Y94A7B.4 [Caenorhabditis elegans] ref|NP_507497.1| Serpentine Receptor, class H family member (srh-296) [Caenorhabditis elegans] 1.0E-159
blast AAK72055 Serpentine receptor, class h protein 297 [Caenorhabditis elegans] ref|NP_494484.3| Serpentine Receptor, class H family member (srh-297) [Caenorhabditis elegans] 1.0E-108
blast CAA19563 Hypothetical protein Y94A7B.1 [Caenorhabditis elegans] ref|NP_507494.2| Serpentine Receptor, class H family member (srh-292) [Caenorhabditis elegans] 1.0E-99
blast CAB03507 Hypothetical protein ZK1037.8 [Caenorhabditis elegans] ref|NP_506801.1| Serpentine Receptor, class H family member (srh-295) [Caenorhabditis elegans] 2.0E-93
blast CAA19566 Hypothetical protein Y94A7B.4 [Caenorhabditis elegans] ref|NP_507497.1| Serpentine Receptor, class H family member (srh-296) [Caenorhabditis elegans] 4.0E-93
blast CAC14401 Hypothetical protein Y59A8A.4 [Caenorhabditis elegans] ref|NP_507505.1| Serpentine Receptor, class H family member (srh-286) [Caenorhabditis elegans] 8.0E-87
Protein Domains
Database ID Description E-Value
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.8E-36
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 8.6E-13
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.0E-126
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 1.8E-71
Pfam IPR003003 EMBL-EBI 7TM chemoreceptor, subfamily 2 4.3E-72
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507495.2 7 15-36,49-71,91-113,134-153,190-212,244-266,276-295
Y94A7B.3 7 15-36,49-71,91-113,134-153,190-212,244-266,276-295
SNAP00000042693 10 57-79,115-137,150-172,206-228,241-263,283-302,322-344,391-410,431-453,468-487
GENEFINDER00000042702 7 21-43,79-101,133-155,165-187,249-271,318-336,357-379
Sequence
Target Sequence 
>C. ELEGANS:183788_AT
ttgcaatgcacacttgctggcgctacactcggtatccatttttaaccctgaactacctaa
tgggaatacttgcctctaccgcatcatatctggagatcccaaatcaagagtacgccagaa
ctgtgacgttcaaagtgtatccaaggatattactttatgataccgcggaacatcggatat
ttattctagctattgacttttactcgcttatcattcgccaatcgttcttcacagcattat
ttctaatcgagcttattgtgttcgtagttctcatccggttgaacatgaaaaaagctctat
ctgggatacggtcttcggtttccagtaaaacattaaaaatgcacaagactttcatgacga
ctttaaatattcaggtagccgttcccatagtcttcatctgtattccatcatttgccagta
ttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGCAATGCACACTTGCTGGCGCTA 481 701 293 Antisense
GCTACACTCGGTATCCATTTTTAAC 407 301 314 Antisense
CTAATGGGAATACTTGCCTCTACCG 57 225 349 Antisense
CTACCGCATCATATCTGGAGATCCC 10 227 368 Antisense
GACTTTTACTCGCTTATCATTCGCC 380 371 487 Antisense
ATCGTTCTTCACAGCATTATTTCTA 9 37 513 Antisense
ATTGTGTTCGTAGTTCTCATCCGGT 286 5 547 Antisense
TCTGGGATACGGTCTTCGGTTTCCA 534 583 592 Antisense
TAAATATTCAGGTAGCCGTTCCCAT 659 639 656 Antisense
TTCCCATAGTCTTCATCTGTATTCC 608 697 674 Antisense
GTATTCCATCATTTGCCAGTATTGC 371 453 692 Antisense
Sequence Source Affymetrix Proprietary Database