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[183787_at]

Description W02H5.1 /REP_DB=WormBase Gene ID /WP=CE21250 /TR=Q9N5C5 /GB=AAF60388.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 50      4grp_highest_8_8 > 04      4grp_high_8_8 > 37      6grp_total > 53      4grp_total > 35      6grp_high1_sub > 03_04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 107
1 2 3 4 range
A 137.3
(3)
P 		129.1
(0.4)
P 		124.7
(-1)
P 		118.5
(-3)
P 		19
B 102.6
(-3)
P 		152.4
(2.1)
P 		116.9
(-1.5)
P 		161.1
(3)
P 		59
C 131.7
(-3)
P 		209.6
(3)
P 		132.5
(-2.9)
P 		142.9
(-2.1)
P 		78
avr 123.9
(-3) 		163.7
(3) 		124.7
(-2.9) 		140.8
(-0.5) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 86.3
(1)
P 		43.3
(-3)
P 		91.7
(1.5)
P 		107.6
(3)
P 		78.3
(0.3)
P 		65.1
(-1)
P 		64
B 78.9
(3)
P 		64.8
(1.4)
P 		67.5
(1.7)
P 		27.5
(-3)
M 		62.6
(1.1)
P 		62.1
(1)
P 		51
C 63.4
(-2.1)
A 		57.6
(-2.6)
A 		131.7
(3)
P 		77.1
(-1.1)
P 		52
(-3)
A 		57.6
(-2.6)
P 		80
avr 76.2
(0) 		55.2
(-3) 		97
(3) 		70.7
(-0.8) 		64.3
(-1.7) 		61.6
(-2.1) 		42
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 43
1 2 3 4 range
A 50
(3)
P 		28
(-1)
P 		32.6
(-0.2)
P 		17.4
(-3)
P 		33
B 32.7
(0.2)
P 		37.6
(3)
P 		27.1
(-3)
P 		34.3
(1.1)
P 		11
C 43.6
(0.2)
P 		60.3
(3)
P 		46.2
(0.7)
P 		24.1
(-3)
P 		36
avr 42.1
(3) 		42
(3) 		35.3
(0.6) 		25.3
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 15.9
(-2.7)
P 		15.4
(-3)
P 		20
(-0.7)
P 		27.3
(3)
P 		23.6
(1.1)
P 		15.8
(-2.8)
P 		12
B 27.4
(3)
P 		21.6
(1.3)
P 		16.4
(-0.3)
P 		7.3
(-3)
M 		25.4
(2.4)
P 		23.2
(1.7)
P 		20
C 23.5
(-0.3)
A 		17.6
(-2.3)
A 		33.5
(3)
P 		15.5
(-3)
P 		16.8
(-2.6)
A 		19.3
(-1.7)
P 		18
avr 22.3
(2.1) 		18.2
(-1.6) 		23.3
(3) 		16.7
(-3) 		21.9
(1.7) 		19.4
(-0.5) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183787_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15213
Sequence Type Exemplar sequence
Representative Public ID W02H5.1 NCBI
Target Description W02H5.1 /REP_DB=WormBase Gene ID /WP=CE21250 /TR=Q9N5C5 /GB=AAF60388.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071322(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071322 NCBI Caenorhabditis elegans W02H5.1 (W02H5.1) mRNA, complete cds. 11/11 None
SNAP00000022934 ENSEMBL cdna:SNAP chromosome:CEL140:V:2638717:2646194:1 11/11 None
GENEFINDER00000022938 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2627054:2646206:1 11/11 None
W02H5.1 ENSEMBL cdna:known chromosome:CEL140:V:2645925:2646206:1 gene:W02H5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2645924-2646206(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl W02H5.1
Entrez Gene 189133 Entrez gene
SwissProt Q9N5C5 EMBL-EBI
WormBase CE21250 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE62529 Hypothetical protein CBG06638 [Caenorhabditis briggsae] 0.0
blast NP_503720 W02H5.4 [Caenorhabditis elegans] ref|NP_503721.1| W02H5.3 [Caenorhabditis elegans] gb|AAF60381.2| Hypothetical protein W02H5.4 [Caenorhabditis elegans] gb|AAF60383.2| Hypothetical protein W02H5.3 [Caenorhabditis elegans] 0.0
blast NP_001024185 W02H5.9 [Caenorhabditis elegans] gb|AAQ91896.1| Hypothetical protein W02H5.9 [Caenorhabditis elegans] 1.0E-162
blast NP_001024185 W02H5.9 [Caenorhabditis elegans] gb|AAQ91896.1| Hypothetical protein W02H5.9 [Caenorhabditis elegans] 1.0E-118
blast NP_503722 W02H5.2 [Caenorhabditis elegans] gb|AAF60385.1| Hypothetical protein W02H5.2 [Caenorhabditis elegans] 1.0E-48
blast NP_503723 W02H5.1 [Caenorhabditis elegans] gb|AAF60388.1| Hypothetical protein W02H5.1 [Caenorhabditis elegans] 2.0E-44
blast CAE62529 Hypothetical protein CBG06638 [Caenorhabditis briggsae] 3.0E-19
Protein Domains
Database ID Description E-Value
Pfam IPR004875 EMBL-EBI CENP-B protein 2.3E-68
Pfam IPR004875 EMBL-EBI CENP-B protein 2.3E-68
Sequence
Target Sequence 
>C. ELEGANS:183787_AT
tgtcgggctcttcaaatggatcatcaactcgttttcggccactcgacgtcaacgtctcag
atctctactaccaagacggaccatcatcagcggatccttctactccaaatcgatctgctc
aatctccgcgccccaatgctccgctgcttcacgatactcacccaccgcagagcccgttgg
cttcaggcggcggcggcggcggcgagaatcgccctcagcctgtcttctttcgtgccatta
acaagaagctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCGGGCTCTTCAAATGGATCATC 231 557 14 Antisense
TCAAATGGATCATCAACTCGTTTTC 537 623 25 Antisense
GCCACTCGACGTCAACGTCTCAGAT 336 279 51 Antisense
CGTCTCAGATCTCTACTACCAAGAC 78 247 66 Antisense
CAGATCTCTACTACCAAGACGGACC 201 205 71 Antisense
CCAAGACGGACCATCATCAGCGGAT 558 275 84 Antisense
CGGATCCTTCTACTCCAAATCGATC 641 243 104 Antisense
TTCTACTCCAAATCGATCTGCTCAA 642 691 111 Antisense
ACTCCAAATCGATCTGCTCAATCTC 589 97 115 Antisense
TGTCTTCTTTCGTGCCATTAACAAG 689 555 234 Antisense
CTTTCGTGCCATTAACAAGAAGCTG 647 221 240 Antisense
Sequence Source Affymetrix Proprietary Database