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[183786_at]

Description F41D9.1 /REP_DB=WormBase Gene ID /WP=CE10236 /TR=Q94222 /GB=AAB52605.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 11      6grp_total > 23      4grp_total > 31      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 290
1 2 3 4 range
A 352.5
(3)
P 		182.5
(-3)
A 		191.2
(-2.7)
A 		207.3
(-2.1)
P 		170
B 416.1
(3)
P 		126.4
(-3)
A 		159.6
(-2.3)
P 		372
(2.1)
P 		290
C 392.6
(3)
P 		162.9
(-2.7)
A 		148.7
(-3)
A 		268.3
(-0.1)
P 		244
avr 387.1
(3) 		157.3
(-3) 		166.5
(-2.8) 		282.5
(0.3) 		230

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 270.5
(3)
P 		251.5
(2)
P 		245.3
(1.7)
P 		236.7
(1.3)
P 		156.5
(-2.7)
M 		151.5
(-3)
P 		119
B 300.6
(3)
P 		266.5
(1.4)
P 		274.6
(1.8)
P 		231.4
(-0.2)
P 		170.3
(-3)
P 		181.4
(-2.5)
M 		130
C 246.9
(0.3)
P 		230.4
(-0.4)
M 		246.7
(0.3)
P 		304.3
(3)
P 		199.1
(-1.9)
M 		175
(-3)
M 		129
avr 272.7
(3) 		249.5
(1.7) 		255.5
(2) 		257.5
(2.1) 		175.3
(-2.7) 		169.3
(-3) 		103
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 128.3
(3)
P 		39.6
(-2.4)
A 		50
(-1.8)
A 		30.4
(-3)
P 		98
B 132.7
(3)
P 		31.2
(-3)
A 		37
(-2.7)
P 		79.3
(-0.2)
P 		102
C 130
(3)
P 		46.8
(-2.9)
A 		51.8
(-2.5)
A 		45.2
(-3)
P 		85
avr 130.3
(3) 		39.2
(-3) 		46.3
(-2.5) 		51.6
(-2.2) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 68
1 2 3 4 5 6 range
A 49.9
(-1.5)
P 		89.5
(3)
P 		53.4
(-1.1)
P 		60
(-0.4)
P 		47.2
(-1.8)
M 		36.9
(-3)
P 		53
B 104.6
(3)
P 		88.7
(0.8)
P 		66.7
(-2.3)
P 		61.3
(-3)
P 		69.2
(-1.9)
P 		67.6
(-2.1)
M 		43
C 91.5
(3)
P 		70.3
(-0.9)
M 		62.8
(-2.2)
P 		61.2
(-2.5)
P 		64.4
(-1.9)
M 		58.6
(-3)
M 		33
avr 82
(2.8) 		82.8
(3) 		61
(-1.6) 		60.8
(-1.6) 		60.3
(-1.8) 		54.4
(-3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183786_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16592
Sequence Type Exemplar sequence
Representative Public ID F41D9.1 NCBI
Target Description F41D9.1 /REP_DB=WormBase Gene ID /WP=CE10236 /TR=Q94222 /GB=AAB52605.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077020(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077020 NCBI Caenorhabditis elegans F41D9.1 (F41D9.1) mRNA, complete cds. 11/11 None
GENEFINDER00000031100 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8377907:8382475:1 11/11 None
SNAP00000031093 ENSEMBL cdna:SNAP chromosome:CEL140:X:8378541:8382475:1 11/11 None
F41D9.1 ENSEMBL cdna:known chromosome:CEL140:X:8378494:8382637:1 gene:F41D9.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8378539-8382474(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41D9.1
Entrez Gene 181091 Entrez gene
SwissProt Q94222 EMBL-EBI
WormBase CE30984 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.17393.1.S1_S_AT similar to RUN and TBC1 domain containing 3 cfa
CANINE_2:CFAAFFX.2655.1.S1_S_AT similar to RUN and TBC1 domain containing 3 cfa
DROSOPHILA_2:1625427_AT dm
DROSGENOME1:154604_AT dm
HG-U133_PLUS_2:214779_S_AT RUN and TBC1 domain containing 3 hs
HG-U133A_2:214779_S_AT RUN and TBC1 domain containing 3 hs
HG-U133A:214779_S_AT RUN and TBC1 domain containing 3 hs
HG-U133A:203014_X_AT RUN and TBC1 domain containing 3 hs
HG-U133_PLUS_2:203014_X_AT RUN and TBC1 domain containing 3 hs
HG-U133A_2:203014_X_AT RUN and TBC1 domain containing 3 hs
HU35KSUBB:RC_Z41592_AT RUN and TBC1 domain containing 3 hs
HG-U133_PLUS_2:215519_X_AT RUN and TBC1 domain containing 3 hs
HG-U133A_2:215519_X_AT RUN and TBC1 domain containing 3 hs
HG-U133A:215519_X_AT RUN and TBC1 domain containing 3 hs
U133_X3P:G11034850_3P_A_AT RUN and TBC1 domain containing 3 hs
U133_X3P:HS.22129.2.S1_3P_X_AT RUN and TBC1 domain containing 3 hs
U133_X3P:HS.22129.2.S1_3P_AT RUN and TBC1 domain containing 3 hs
U133_X3P:HS.22129.1.S1_3P_A_AT RUN and TBC1 domain containing 3 hs
HG-U95AV2:33366_AT RUN and TBC1 domain containing 3 hs
U133_X3P:HS.306774.0.S1_3P_X_AT RUN and TBC1 domain containing 3 hs
U133_X3P:HS.306774.0.S1_3P_AT RUN and TBC1 domain containing 3 hs
U133_X3P:233627_3P_AT RUN and TBC1 domain containing 3 hs
HG-U133_PLUS_2:233627_AT RUN and TBC1 domain containing 3 hs
HG-U133B:233627_AT RUN and TBC1 domain containing 3 hs
HG-U95C:58274_AT RUN and TBC1 domain containing 3 hs
MOUSE430_2:1432091_A_AT RUN and TBC1 domain containing 3 mm
MOUSE430A_2:1432091_A_AT RUN and TBC1 domain containing 3 mm
MOE430A:1432091_A_AT RUN and TBC1 domain containing 3 mm
MG-U74BV2:110278_AT RUN and TBC1 domain containing 3 mm
MOE430B:1459648_AT RUN and TBC1 domain containing 3, mRNA (cDNA clone MGC:38199 IMAGE:5322980) mm
MOUSE430_2:1459648_AT RUN and TBC1 domain containing 3, mRNA (cDNA clone MGC:38199 IMAGE:5322980) mm
MU19KSUBB:TC26564_AT RUN and TBC1 domain containing 3, mRNA (cDNA clone MGC:38199 IMAGE:5322980) mm
MU19KSUBC:TC35695_AT RUN and TBC1 domain containing 3, mRNA (cDNA clone MGC:38199 IMAGE:5322980) mm
RG-U34B:RC_AI060203_AT RUN and TBC1 domain containing 3 rn
RAE230A:1373687_AT RUN and TBC1 domain containing 3 rn
RAT230_2:1373687_AT RUN and TBC1 domain containing 3 rn
RAE230A:1373308_AT RUN and TBC1 domain containing 3 rn
RAT230_2:1373308_AT RUN and TBC1 domain containing 3 rn
RAE230A:1390679_AT RUN and TBC1 domain containing 3 rn
RAT230_2:1390679_AT RUN and TBC1 domain containing 3 rn
Protein Similarities
Method ID Description E-Value
blast AAB52605 Hypothetical protein F41D9.1 [Caenorhabditis elegans] ref|NP_509421.2| F41D9.1 [Caenorhabditis elegans] 0.0
blast CAE74891 Hypothetical protein CBG22756 [Caenorhabditis briggsae] 0.0
blast XP_395011 PREDICTED: similar to ENSANGP00000017555 [Apis mellifera] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000195 EMBL-EBI RabGAP/TBC domain 9.4E-42
Pfam IPR001452 EMBL-EBI SH3 4.7E-15
Pfam IPR004012 EMBL-EBI RUN domain 5.6E-63
Pfam IPR000195 EMBL-EBI RabGAP/TBC domain 9.4E-42
Pfam IPR001452 EMBL-EBI SH3 4.7E-15
Pfam IPR004012 EMBL-EBI RUN domain 5.6E-63
Pfam IPR001452 EMBL-EBI SH3 4.7E-15
Pfam IPR004012 EMBL-EBI RUN domain 5.6E-63
Sequence
Target Sequence 
>C. ELEGANS:183786_AT
atcaccgagtacattcgtggccgattagctaatagttttcgacaaataatggatcatgga
attcgagagaatgcattgtatacatctatggcataccatccatggtcattcattgaagat
attgcatattattcagtggagaaaaacttcaattcgattttgaccccagaagaacttctc
ttccgatcggttcaacttataaacgattctcacaacgccgtctcggcgcattcagatgtg
aaacttagaagtcttctcgtcgtcggggtcaacgagcaatgcattcatctgtggtttgac
cttctatgttccgccacacaacacgaacacattcgaaataaatactatcacagttgggca
ttcatacgatcaccagcgtggcgccaaatcaagtgtgacctcaggcttttgagtcagttc
tcgttcaatctcagcatgtcattcgaaattgagggaatagacaaaaagaagcggaagttt
gttaatgggctacttacaagtcaaaaaaagaagattctctcgacggttgtgtcttcttcg
caggacaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCACCGAGTACATTCGTGGCCGAT 540 27 1810 Antisense
ACTTCTCTTCCGATCGGTTCAACTT 320 103 1983 Antisense
ATAAACGATTCTCACAACGCCGTCT 162 13 2008 Antisense
CAACGCCGTCTCGGCGCATTCAGAT 628 187 2022 Antisense
CTGTGGTTTGACCTTCTATGTTCCG 404 239 2098 Antisense
GCATTCATACGATCACCAGCGTGGC 643 307 2167 Antisense
GCGTGGCGCCAAATCAAGTGTGACC 395 293 2185 Antisense
GTGTGACCTCAGGCTTTTGAGTCAG 106 487 2202 Antisense
TCAGTTCTCGTTCAATCTCAGCATG 686 623 2223 Antisense
AGAAGATTCTCTCGACGGTTGTGTC 185 75 2318 Antisense
GGTTGTGTCTTCTTCGCAGGACAAT 500 507 2334 Antisense
Sequence Source Affymetrix Proprietary Database