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[183785_at]

Description F26F4.6 /REP_DB=WormBase Gene ID /WP=CE01263 /TR=Q19817 /GB=AAA91221.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 80      6grp_total > 02      4grp_total > 37      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 146
1 2 3 4 range
A 162.1
(-2.3)
P 		232.3
(3)
P 		152.6
(-3)
P 		197
(0.3)
P 		80
B 255.1
(3)
P 		109.1
(-3)
P 		109.6
(-3)
P 		168.3
(-0.6)
P 		146
C 194.1
(3)
P 		166.3
(0.7)
P 		134.3
(-1.9)
P 		120.5
(-3)
P 		74
avr 203.8
(3) 		169.2
(0.1) 		132.2
(-3) 		161.9
(-0.5) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 110
1 2 3 4 5 6 range
A 240.6
(2)
P 		253.8
(3)
P 		177.4
(-2.8)
P 		236.3
(1.7)
P 		174.7
(-3)
P 		184.4
(-2.3)
P 		79
B 184
(0.2)
P 		217.8
(3)
P 		184
(0.2)
P 		144.2
(-3)
P 		196.9
(1.3)
P 		172.9
(-0.7)
P 		74
C 213.9
(3)
P 		206.1
(2)
P 		167.6
(-3)
P 		188.1
(-0.3)
P 		194.3
(0.5)
P 		196.3
(0.7)
P 		46
avr 212.8
(1.4) 		225.9
(3) 		176.3
(-3) 		189.5
(-1.4) 		188.6
(-1.5) 		184.5
(-2) 		50
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 59
(3)
P 		50.4
(1.3)
P 		39.9
(-0.8)
P 		28.8
(-3)
P 		30
B 81.3
(3)
P 		27
(-2.8)
P 		25.4
(-3)
P 		35.9
(-1.9)
P 		56
C 64.2
(3)
P 		47.8
(0.8)
P 		46.8
(0.6)
P 		20.3
(-3)
P 		44
avr 68.2
(3) 		41.7
(-1) 		37.4
(-1.6) 		28.3
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 44.4
(-2.3)
P 		90.3
(3)
P 		38.6
(-3)
P 		59.9
(-0.5)
P 		52.7
(-1.4)
P 		44.9
(-2.3)
P 		52
B 64
(0.7)
P 		72.5
(1.9)
P 		44.7
(-2.1)
P 		38.2
(-3)
P 		80
(3)
P 		64.5
(0.8)
P 		42
C 79.3
(3)
P 		62.9
(0.6)
P 		42.7
(-2.3)
P 		37.8
(-3)
P 		62.9
(0.6)
P 		65.7
(1)
P 		42
avr 62.6
(0.7) 		75.2
(3) 		42
(-3) 		45.3
(-2.4) 		65.2
(1.2) 		58.4
(-0) 		33
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183785_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6165
Sequence Type Exemplar sequence
Representative Public ID F26F4.6 NCBI
Target Description F26F4.6 /REP_DB=WormBase Gene ID /WP=CE01263 /TR=Q19817 /GB=AAA91221.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065624(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065624 NCBI Caenorhabditis elegans F26F4.6 (F26F4.6) mRNA, complete cds. 11/11 None
GENEFINDER00000005764 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:4888158:4893354:-1 11/11 None
SNAP00000005748 ENSEMBL cdna:SNAP chromosome:CEL140:III:4892810:4893354:-1 11/11 None
F26F4.6 ENSEMBL cdna:known chromosome:CEL140:III:4891580:4893370:-1 gene:F26F4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4892809-4893354(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26F4.6
Entrez Gene 184990 Entrez gene
SwissProt Q19817 EMBL-EBI
WormBase CE29290 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast T16167 hypothetical protein F26F4.5 - Caenorhabditis elegans 0.0
blast AAL02497 Hypothetical protein F26F4.5 [Caenorhabditis elegans] ref|NP_498024.1| F26F4.5 [Caenorhabditis elegans] 0.0
blast CAE71095 Hypothetical protein CBG17945 [Caenorhabditis briggsae] 1.0E-143
blast AAL02498 Hypothetical protein F26F4.6 [Caenorhabditis elegans] ref|NP_498025.1| F26F4.6 [Caenorhabditis elegans] 1.0E-130
blast CAE71094 Hypothetical protein CBG17944 [Caenorhabditis briggsae] 1.0E-53
blast T16167 hypothetical protein F26F4.5 - Caenorhabditis elegans 3.0E-53
blast AAL02498 Hypothetical protein F26F4.6 [Caenorhabditis elegans] ref|NP_498025.1| F26F4.6 [Caenorhabditis elegans] 1.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR001715 EMBL-EBI Calponin-like actin-binding 6.4E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000005764 1 297-319
Sequence
Target Sequence 
>C. ELEGANS:183785_AT
ctgaagaatcagctcgacgacctcaatcaattagtcatttggcacgagtggaagtagaag
aaccagcaaggaaaatgagattaatgttcggtgagaaacaagtggtcttcatccgatcgg
atggtttgagaagccgagttgttcgggagaatatgaagaagaagttgagtcaagaaattg
agaaaaaggaagatttggacacagattcaccaaatctcacaaaagtgattgatgatgtgg
caagtggagcaacaggatcatcttctcttccatctagttccactgaatcatattcaactt
catcatcatcatcttcttcgtcttctgacttgaattctgcatattcttcgacatctgagc
ctcaagcaacaagttcttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGAAGAATCAGCTCGACGACCTCA 127 239 35 Antisense
AGCTCGACGACCTCAATCAATTAGT 117 81 45 Antisense
AATTAGTCATTTGGCACGAGTGGAA 263 175 63 Antisense
GAAACAAGTGGTCTTCATCCGATCG 320 353 129 Antisense
GGATGGTTTGAGAAGCCGAGTTGTT 363 513 153 Antisense
GGACACAGATTCACCAAATCTCACA 20 527 231 Antisense
TCTTCCATCTAGTTCCACTGAATCA 650 617 300 Antisense
ATCTTCTTCGTCTTCTGACTTGAAT 392 31 345 Antisense
AATTCTGCATATTCTTCGACATCTG 424 177 367 Antisense
TTCTTCGACATCTGAGCCTCAAGCA 83 691 378 Antisense
GAGCCTCAAGCAACAAGTTCTTCTG 343 385 391 Antisense
Sequence Source Affymetrix Proprietary Database