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[183784_at]

Description K02F2.4 /REP_DB=WormBase Gene ID /WP=CE17156 /TR=O44984 /GB=AAB97567.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 96      4grp_total > 02      6grp_cgc > 68      6grp_cgc_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 56.1
(-3)
P 		72
(-1.5)
A 		56.7
(-2.9)
A 		121.7
(3)
P 		66
B 78
(-0.8)
A 		87.8
(3)
A 		72.2
(-3)
A 		82.8
(1.1)
P 		16
C 78.8
(-2)
P 		54.3
(-3)
A 		86.3
(-1.8)
P 		208.4
(3)
P 		154
avr 71
(-3) 		71.4
(-3) 		71.7
(-2.9) 		137.6
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 214
1 2 3 4 5 6 range
A 79.8
(-2.2)
A 		59.4
(-3)
A 		116.8
(-0.7)
P 		126.2
(-0.3)
P 		209.5
(3)
P 		169.6
(1.4)
P 		150
B 69.7
(-3)
A 		79.5
(-2.7)
A 		93.2
(-2.2)
A 		158.7
(0)
P 		160.4
(0.1)
P 		246.1
(3)
P 		176
C 62.7
(-3)
A 		86
(-2.3)
A 		99.6
(-2)
A 		142.7
(-0.7)
P 		118.2
(-1.4)
P 		273.6
(3)
P 		211
avr 70.7
(-3) 		75
(-2.8) 		103.2
(-1.8) 		142.5
(-0.3) 		162.7
(0.5) 		229.8
(3) 		159
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 20.4
(3)
P 		15.6
(-2.1)
A 		14.8
(-3)
A 		17.8
(0.2)
P 		6
B 24.9
(3)
A 		21.7
(0.7)
A 		16.7
(-3)
A 		17.6
(-2.3)
P 		8
C 26.1
(0.2)
P 		15.6
(-3)
A 		30.1
(1.5)
P 		35.1
(3)
P 		20
avr 23.8
(3) 		17.6
(-3) 		20.5
(-0.2) 		23.5
(2.7) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 14.7
(-3)
A 		21.1
(-2.2)
A 		25.4
(-1.7)
P 		32
(-0.9)
P 		63.2
(3)
P 		41.3
(0.3)
P 		49
B 24.3
(-2.9)
A 		26.5
(-2.7)
A 		22.6
(-3)
A 		42
(-1.3)
P 		65.2
(0.7)
P 		91.8
(3)
P 		69
C 23.2
(-3)
A 		26.2
(-2.7)
A 		25.3
(-2.8)
A 		28.7
(-2.5)
P 		38.2
(-1.7)
P 		91.6
(3)
P 		68
avr 20.7
(-3) 		24.6
(-2.6) 		24.4
(-2.6) 		34.2
(-1.5) 		55.5
(0.9) 		74.9
(3) 		54
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183784_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2277
Sequence Type Exemplar sequence
Representative Public ID K02F2.4 NCBI
Target Description K02F2.4 /REP_DB=WormBase Gene ID /WP=CE17156 /TR=O44984 /GB=AAB97567.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059551(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059551 NCBI Caenorhabditis elegans Ubiquitin-Like Protease family member (ulp-5) (ulp-5) mRNA, complete cds. 11/11 None
SNAP00000018472 ENSEMBL cdna:SNAP chromosome:CEL140:I:6820834:6822182:1 10/11 None
GENEFINDER00000018482 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:6820834:6822182:1 11/11 None
K02F2.4 ENSEMBL cdna:known chromosome:CEL140:I:6820834:6822182:1 gene:K02F2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6820764-6822113(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ulp-5
Ensembl K02F2.4
Entrez Gene 186900 Entrez gene
SwissProt O44984 EMBL-EBI
WormBase CE17156 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8234 cysteine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB97567 Ubiquitin-like protease protein 5 [Caenorhabditis elegans] ref|NP_491952.1| Ubiquitin-Like Protease family member (ulp-5) [Caenorhabditis elegans] 0.0
blast AAB97567 Ubiquitin-like protease protein 5 [Caenorhabditis elegans] ref|NP_491952.1| Ubiquitin-Like Protease family member (ulp-5) [Caenorhabditis elegans] 1.0E-157
blast EAA11878 ENSANGP00000004517 [Anopheles gambiae str. PEST] ref|XP_315906.2| ENSANGP00000004517 [Anopheles gambiae str. PEST] 2.0E-10
Protein Domains
Database ID Description E-Value
Pfam IPR003653 EMBL-EBI Peptidase C48, SUMO/Sentrin/Ubl1 2.1E-42
Pfam IPR003653 EMBL-EBI Peptidase C48, SUMO/Sentrin/Ubl1 8.5E-66
Sequence
Target Sequence 
>C. ELEGANS:183784_AT
agctcgccaaccactataacagattcttccgcagcaaaaatgatgccgaaacgtttctca
aaaaagatattctgctaatcccagttcatctcgacaaaccgaaacattggttcctcgtga
ttgtgcataatccatcaggcgcggttcgtcgaatttccgacgtcaatatacttgacgcga
ccaataaagtgaagagtagacgattgtcaagacggataaccggtcatgttaattgtgatg
aaaatgccggtgaatgtcgaattattatcatggatagcctggttcattcaaaaaaataca
gagaagttattgataagacccatgattccacttttgatcacattcgtctttggctcctga
tgtccgcagctgcaactgatgttgatatgttttgcacgagattccgaaaagttgtgtgtc
agaagcttccgcaacaaaaaaattcagtggattgtggtatctttatgatggcattcgcag
agtattttacaaaatacaatactgcgtggcagagcctgccgacagatgctctcgctgatt
tga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTCGCCAACCACTATAACAGATT 259 81 320 Antisense
ATAACAGATTCTTCCGCAGCAAAAA 316 25 335 Antisense
TTCTGCTAATCCCAGTTCATCTCGA 96 695 389 Antisense
CATTGGTTCCTCGTGATTGTGCATA 583 215 424 Antisense
TGTGCATAATCCATCAGGCGCGGTT 140 557 441 Antisense
GGCGCGGTTCGTCGAATTTCCGACG 237 541 457 Antisense
AAGACCCATGATTCCACTTTTGATC 619 153 634 Antisense
TTTTGATCACATTCGTCTTTGGCTC 564 677 651 Antisense
TGATGTCCGCAGCTGCAACTGATGT 225 567 677 Antisense
CAATACTGCGTGGCAGAGCCTGCCG 372 181 816 Antisense
CCGACAGATGCTCTCGCTGATTTGA 694 263 838 Antisense
Sequence Source Affymetrix Proprietary Database