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[183781_at]

Description C47E12.9 /REP_DB=WormBase Gene ID /WP=CE05453 /TR=Q18676 /GB=CAA93103.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 09      6grp_total > 74      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 187.9
(3)
P 		74.1
(-1.9)
A 		48.6
(-3)
A 		119.7
(0.1)
P 		139
B 191.9
(3)
P 		68.8
(-2.1)
P 		47
(-3)
A 		172.6
(2.2)
P 		145
C 173.3
(1.6)
P 		119.7
(-1.3)
P 		87.2
(-3)
P 		199.7
(3)
P 		113
avr 184.4
(3) 		87.5
(-1.7) 		60.9
(-3) 		164
(2) 		124

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 21.1
(-3)
A 		33.9
(-2.3)
A 		103.9
(1.7)
P 		125.9
(3)
P 		49.1
(-1.4)
A 		52.7
(-1.2)
A 		105
B 20.4
(-3)
A 		37.5
(-2)
A 		104
(1.8)
P 		125.9
(3)
P 		89.6
(0.9)
P 		116.4
(2.5)
P 		106
C 16.6
(-2.4)
A 		6.7
(-3)
A 		58
(0.3)
P 		72.7
(1.2)
P 		51.1
(-0.2)
P 		100.9
(3)
P 		94
avr 19.4
(-3) 		26
(-2.6) 		88.6
(1.7) 		108.2
(3) 		63.3
(-0) 		90
(1.8) 		89
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 68.4
(3)
P 		16.1
(-2.6)
A 		12.7
(-3)
A 		17.5
(-2.5)
P 		56
B 61.2
(3)
P 		17
(-2.3)
P 		10.9
(-3)
A 		36.8
(0.1)
P 		50
C 57.4
(3)
P 		34.4
(-2.1)
P 		30.4
(-3)
P 		33.7
(-2.3)
P 		27
avr 62.3
(3) 		22.5
(-2.4) 		18
(-3) 		29.3
(-1.5) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 3.9
(-3)
A 		12
(-1.3)
A 		22.6
(1)
P 		31.9
(3)
P 		14.8
(-0.7)
A 		12.8
(-1.1)
A 		28
B 7.1
(-3)
A 		12.5
(-2.1)
A 		25.3
(0)
P 		33.4
(1.3)
P 		36.4
(1.8)
P 		43.4
(3)
P 		36
C 6.2
(-2.2)
A 		2.1
(-3)
A 		14.8
(-0.6)
P 		14.6
(-0.6)
P 		16.5
(-0.3)
P 		33.8
(3)
P 		32
avr 5.7
(-3) 		8.9
(-2.2) 		20.9
(0.8) 		26.6
(2.2) 		22.6
(1.2) 		30
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183781_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9101
Sequence Type Exemplar sequence
Representative Public ID C47E12.9 NCBI
Target Description C47E12.9 /REP_DB=WormBase Gene ID /WP=CE05453 /TR=Q18676 /GB=CAA93103.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069395(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069395 NCBI Caenorhabditis elegans C47E12.9 (C47E12.9) mRNA, complete cds. 11/11 None
C47E12.9 ENSEMBL cdna:known chromosome:CEL140:IV:9974675:9975432:1 gene:C47E12.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:9974680-9975438(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C47E12.9
Entrez Gene 183555 Entrez gene
SwissProt Q18676 EMBL-EBI
WormBase CE32612 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93103 Hypothetical protein C47E12.9 [Caenorhabditis elegans] ref|NP_501796.2| C47E12.9 [Caenorhabditis elegans] 1.0E-106
blast CAE59956 Hypothetical protein CBG03444 [Caenorhabditis briggsae] 3.0E-31
Sequence
Target Sequence 
>C. ELEGANS:183781_AT
gtttgttttctatattcctggttctgttatcatttttcaaaaatgttgtatgtgaagatc
aacttacatatgaattcaatgaacaaaataatttggaagactcgaggaaaacagtaatga
aggcaattgatcaaaactgggcacctgtgatggccattccattttgcgcgcctgttggga
aacgagatcctgttttaatgaatccaatagaaaaagttaaagaaaatgtggaaatatttg
tcaattatcgtgatgctctgaagacatactctgataaagttctggagaaatcaattagtt
tgggacttttcgaatattctgaaatcgaaaaaattcgcgaactgttttgggaagtcgaaa
tgcgtagttcacaaactttggtggga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTTGTTTTCTATATTCCTGGTTCT 232 451 26 Antisense
TCCTGGTTCTGTTATCATTTTTCAA 174 595 41 Antisense
GCAATTGATCAAAACTGGGCACCTG 39 323 148 Antisense
AACTGGGCACCTGTGATGGCCATTC 424 143 160 Antisense
TGTGATGGCCATTCCATTTTGCGCG 354 555 171 Antisense
TTTTGCGCGCCTGTTGGGAAACGAG 450 671 187 Antisense
ACGAGATCCTGTTTTAATGAATCCA 611 93 207 Antisense
GTGATGCTCTGAAGACATACTCTGA 607 483 275 Antisense
TTCGCGAACTGTTTTGGGAAGTCGA 535 583 359 Antisense
GGGAAGTCGAAATGCGTAGTTCACA 548 493 374 Antisense
GCGTAGTTCACAAACTTTGGTGGGA 617 291 387 Antisense
Sequence Source Affymetrix Proprietary Database