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[183780_at]

Description F01G10.5 /REP_DB=WormBase Gene ID /WP=CE09167 /TR=O17763 /GB=CAB02893.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 79      4grp_total > 19      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 152
1 2 3 4 range
A 23.7
(-2.1)
A 		34.2
(-1.6)
A 		6.6
(-3)
A 		121.8
(3)
A 		115
B 24.4
(-0.6)
A 		51.8
(3)
A 		6
(-3)
A 		30.5
(0.2)
A 		46
C 30
(-2)
A 		54
(-1)
A 		4.5
(-3)
A 		156.2
(3)
A 		152
avr 26
(-1.7) 		46.7
(-0.5) 		5.7
(-3) 		102.8
(3) 		97

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 10.4
(-3)
A 		19.8
(-2.1)
A 		76.2
(3)
A 		30.2
(-1.2)
A 		18.1
(-2.3)
A 		66.9
(2.2)
A 		66
B 39.1
(-0.5)
A 		61.2
(1.8)
A 		25.8
(-1.8)
A 		14.1
(-3)
A 		73.4
(3)
A 		45.2
(0.1)
A 		59
C 3.5
(-3)
A 		79.8
(3)
A 		43.6
(0.2)
A 		37.7
(-0.3)
A 		71.8
(2.4)
A 		56.4
(1.2)
A 		76
avr 17.7
(-3) 		53.6
(2.6) 		48.5
(1.8) 		27.3
(-1.5) 		54.4
(2.7) 		56.2
(3) 		39
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 8.6
(-0.4)
A 		7.4
(-0.9)
A 		1.7
(-3)
A 		17.8
(3)
A 		16
B 7.8
(0.4)
A 		12.8
(3)
A 		1.4
(-3)
A 		6.5
(-0.3)
A 		11
C 9.9
(-1)
A 		15.5
(0.4)
A 		1.6
(-3)
A 		26.3
(3)
A 		25
avr 8.8
(-0.2) 		11.9
(1) 		1.6
(-3) 		16.9
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 1.9
(-3)
A 		7
(-0.9)
A 		16.6
(3)
A 		7.7
(-0.6)
A 		5.5
(-1.5)
A 		16.3
(2.9)
A 		15
B 13.6
(-0.7)
A 		20.4
(0.8)
A 		6.3
(-2.4)
A 		3.7
(-3)
A 		29.8
(3)
A 		16.9
(0)
A 		26
C 1.3
(-3)
A 		24.3
(3)
A 		11.1
(-0.4)
A 		7.6
(-1.4)
A 		23.2
(2.7)
A 		18.9
(1.6)
A 		23
avr 5.6
(-3) 		17.2
(2) 		11.3
(-0.5) 		6.3
(-2.7) 		19.5
(3) 		17.4
(2.1) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183780_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9579
Sequence Type Exemplar sequence
Representative Public ID F01G10.5 NCBI
Target Description F01G10.5 /REP_DB=WormBase Gene ID /WP=CE09167 /TR=O17763 /GB=CAB02893.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069472(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069472 NCBI Caenorhabditis elegans F01G10.5 (F01G10.5) mRNA, complete cds. 11/11 None
SNAP00000013156 ENSEMBL cdna:SNAP chromosome:CEL140:IV:10228071:10230896:-1 11/11 None
GENEFINDER00000013171 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:10228071:10230896:-1 11/11 None
F01G10.5 ENSEMBL cdna:known chromosome:CEL140:IV:10228071:10230991:-1 gene:F01G10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10228076-10230902(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F01G10.5
Entrez Gene 177904 Entrez gene
SwissProt O17763 EMBL-EBI
WormBase CE09167 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02893 Hypothetical protein F01G10.5 [Caenorhabditis elegans] ref|NP_501873.1| F01G10.5 [Caenorhabditis elegans] 0.0
blast CAA85342 Hypothetical protein T09A5.10 [Caenorhabditis elegans] ref|NP_495654.1| abnormal cell LINeage family member (lin-5) [Caenorhabditis elegans] gb|AAF61239.1| LIN-5 [Caenorhabditis elegans] sp|P45970|LIN5_CAEEL Spindle apparatus protein lin-5 (Abnormal cell lineage protein 5) 0.0
blast CAE75264 Hypothetical protein CBG23227 [Caenorhabditis briggsae] 1.0E-173
Sequence
Target Sequence 
>C. ELEGANS:183780_AT
cttcgtcaaagattcccgtagtggggttatgaaaagaagcacgtcgtccgacagcctcgc
tgaatttctttcaaaaggcaatgataatgagacattagaggaaatgatgagactgatagc
acaaacacctcgtaaatcagttgcattcagtttcgacctcgacgaagacgaaactttgaa
aggaactccaattggattcagaactaacttgaacgagacacgagaatcgattgcttcgga
cgaattttttgatcgttttccatcaacttttccaacaagagctgcaccacgtgaatcggt
cgtttcaattggagaacccaaaaaccaattttctccgctaggaacatccaaggatagagt
caagactcttacttctcgaaatgaaaaagtgaagcctcatttgaaaagttcatatgctac
agagatgggtaatgtaacatcgccttcggctgacgaggagaacgttcgtaaaggaaaatc
gaagtcgattttcgcaaaactcaaagggcccagacgtgattcgttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCGTCAAAGATTCCCGTAGTGGG 390 7 1932 Antisense
AAAGAAGCACGTCGTCCGACAGCCT 582 123 1964 Antisense
ACAGCCTCGCTGAATTTCTTTCAAA 367 109 1982 Antisense
GACTGATAGCACAAACACCTCGTAA 705 375 2042 Antisense
ATCAGTTGCATTCAGTTTCGACCTC 330 29 2067 Antisense
TTTCCAACAAGAGCTGCACCACGTG 44 669 2200 Antisense
GCACCACGTGAATCGGTCGTTTCAA 221 313 2215 Antisense
AATTTTCTCCGCTAGGAACATCCAA 350 175 2258 Antisense
GAGTCAAGACTCTTACTTCTCGAAA 179 399 2288 Antisense
TAACATCGCCTTCGGCTGACGAGGA 502 637 2366 Antisense
CAAAGGGCCCAGACGTGATTCGTTC 268 191 2433 Antisense
Sequence Source Affymetrix Proprietary Database