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[183779_at]

Description ZK121.1 /REP_DB=WormBase Gene ID /WP=CE23453 /TR=Q9N4P2 /GB=AAF39994.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 73      4grp_highest_8_8 > 05      4grp_high_8_8 > 30      6grp_highest_nonorm > 63      6grp_total > 64      4grp_total > 33      6grp_high1_sub > 03_04      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 270
1 2 3 4 range
A 330.5
(-3)
P 		600.7
(3)
P 		482.4
(0.4)
P 		562.8
(2.2)
P 		270
B 423.4
(-2.2)
P 		407.5
(-3)
P 		530.8
(3)
P 		530
(3)
P 		123
C 441.5
(-3)
P 		528.4
(2.8)
P 		479.4
(-0.5)
P 		531.5
(3)
P 		90
avr 398.5
(-3) 		512.2
(1.8) 		497.5
(1.2) 		541.4
(3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 472
1 2 3 4 5 6 range
A 378.3
(-3)
P 		422.4
(-2.4)
P 		769.4
(2)
P 		850.7
(3)
P 		402
(-2.7)
P 		578.4
(-0.5)
P 		472
B 396.5
(-3)
P 		502.5
(-0.5)
P 		655.3
(3)
P 		462.6
(-1.5)
P 		501.5
(-0.6)
P 		618.6
(2.1)
P 		259
C 479.3
(-2.4)
P 		453.9
(-3)
P 		635.7
(1)
P 		728.3
(3)
P 		613.7
(0.5)
P 		633.5
(0.9)
P 		274
avr 418
(-3) 		459.6
(-2.1) 		686.8
(3) 		680.5
(2.9) 		505.7
(-1) 		610.2
(1.3) 		269
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 120.3
(1.7)
P 		130.4
(3)
P 		126.1
(2.5)
P 		82.4
(-3)
P 		48
B 135
(3)
P 		100.6
(-3)
P 		123
(0.9)
P 		112.9
(-0.9)
P 		34
C 146.2
(1.4)
P 		151.9
(1.8)
P 		167.1
(3)
P 		89.6
(-3)
P 		78
avr 133.8
(2.3) 		127.6
(1.5) 		138.7
(3) 		95
(-3) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 69.7
(-3)
P 		150.2
(0.3)
P 		167.6
(1)
P 		215.8
(3)
P 		121.3
(-0.9)
P 		140.8
(-0.1)
P 		146
B 138
(-2.1)
P 		167.3
(-0.5)
P 		159.1
(-1)
P 		122.5
(-3)
P 		203.8
(1.5)
P 		230.7
(3)
P 		108
C 177.7
(0.2)
P 		138.5
(-3)
P 		161.8
(-1.1)
P 		146.5
(-2.3)
P 		198.6
(1.9)
P 		212.1
(3)
P 		74
avr 128.5
(-3) 		152
(-0.9) 		162.8
(0.1) 		161.6
(0) 		174.6
(1.2) 		194.5
(3) 		66
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 183779_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7248
Sequence Type Exemplar sequence
Representative Public ID ZK121.1 NCBI
Target Description ZK121.1 /REP_DB=WormBase Gene ID /WP=CE23453 /TR=Q9N4P2 /GB=AAF39994.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065742(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065742 NCBI Caenorhabditis elegans ZK121.1 (ZK121.1) mRNA, complete cds. 11/11 None
SNAP00000003774 ENSEMBL cdna:SNAP chromosome:CEL140:III:5345360:5346058:-1 11/11 None
GENEFINDER00000003778 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:5345360:5346058:-1 11/11 None
ZK121.1 ENSEMBL cdna:known chromosome:CEL140:III:5345238:5346073:-1 gene:ZK121.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5345358-5346057(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK121.1
Entrez Gene 191230 Entrez gene
SwissProt Q9N4P2 EMBL-EBI
WormBase CE29627 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF39994 Hypothetical protein ZK121.1 [Caenorhabditis elegans] ref|NP_498143.1| ZK121.1 [Caenorhabditis elegans] 9.0E-64
blast AAF39994 Hypothetical protein ZK121.1 [Caenorhabditis elegans] ref|NP_498143.1| ZK121.1 [Caenorhabditis elegans] 1.0E-60
blast CAE56853 Hypothetical protein CBG24680 [Caenorhabditis briggsae] 4.0E-58
blast CAE56853 Hypothetical protein CBG24680 [Caenorhabditis briggsae] 7.0E-55
blast CAE58431 Hypothetical protein CBG01566 [Caenorhabditis briggsae] 2.0E-16
Protein Domains
Database ID Description E-Value
Pfam IPR002109 EMBL-EBI Glutaredoxin 5.1E-17
Pfam IPR002109 EMBL-EBI Glutaredoxin 5.1E-17
Sequence
Target Sequence 
>C. ELEGANS:183779_AT
aggagtcacctcaaaagtcaatgttgatgttgtacaggaacagaactttgtaaataaatg
gaaacttttttggaatttaaaaaatcgattacaggtgaaaaaggatccagttgtgatgta
cacaaaaacatcatgcacattctgtaatcgagcaaaagatctattttccgatgttcgtgt
tgcttataaagaagtgaatttggacactttgaaggcatctcaaccggatgattatttggg
aattgtcaatggacttgtatatactacacgacagaccagtgtgccacagatctttgtctg
cggtcgtttcatcggtggatacactgagctggatgctctccgcaactctggacacctctt
cgaagcaattgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGAGTCACCTCAAAAGTCAATGTT 393 55 18 Antisense
AAAGGATCCAGTTGTGATGTACACA 128 121 117 Antisense
CATCATGCACATTCTGTAATCGAGC 264 213 146 Antisense
AAGATCTATTTTCCGATGTTCGTGT 501 155 173 Antisense
GACACTTTGAAGGCATCTCAACCGG 324 365 220 Antisense
TGGACTTGTATATACTACACGACAG 638 545 267 Antisense
ACGACAGACCAGTGTGCCACAGATC 616 91 285 Antisense
GCCACAGATCTTTGTCTGCGGTCGT 322 277 300 Antisense
TCATCGGTGGATACACTGAGCTGGA 391 621 326 Antisense
TACACTGAGCTGGATGCTCTCCGCA 121 643 337 Antisense
GGACACCTCTTCGAAGCAATTGCTC 255 525 367 Antisense
Sequence Source Affymetrix Proprietary Database